Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g02276 | ATGATGGAGTGGGAAAAACCTGAGCAGCAAAATCCTTACCATCACCACCACAACCCTCCTCTTTGTGACGATCATCTCCATCACCTCACCGGTACTACCGCAGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGACCAATTGGAGACTCTTCGCAAACAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTTACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGAGGTGGACTCCCACACCTGTCCAGCTTCAGATCTTAGAGCGTATATTCGACCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAACTGGGGCAGCATGGCCAAATTTCTGAGTCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGAAAGCAGCAAAGTGCCGCACCAGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAATCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTAATCAACCCTCTGCACCTTTGGGGGACGACATGTGCTTTCAGAGTCCGGAGATGAGTTCTGAACTGCATTTTCTGGATCCAAACACCAACAAAGCTGATACTTTGTTCCCTTCAAATGGAAGTTTAAAAACGGCAAGAAGCTTCAGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCCGCTGACAGGAAAGATTGAAACTCCAGAGAACTATAGTATCTACCAGCAAGCAGAAGGCTACGACATGACGGAACGACCATGA | 846 | 47.04 | MMEWEKPEQQNPYHHHHNPPLCDDHLHHLTGTTAAGALYVKVMTDDQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSAAPAYGESEVETEVESPKDKKTKPVDFQTNQPSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEPLTGKIETPENYSIYQQAEGYDMTERP* | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26696933 | 26699071 | - | Chy6G128040.1 | Chy06g02276 | 229985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g02276 | 281 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
| Chy06g02276 | 281 | ProSiteProfiles | 'Homeobox' domain profile. | 98 | 163 | IPR001356 | GO:0003677 | |
| Chy06g02276 | 281 | PANTHER | - | 2 | 278 | - | - | |
| Chy06g02276 | 281 | MobiDBLite | consensus disorder prediction | 161 | 201 | - | - | |
| Chy06g02276 | 281 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 278 | IPR044559 | GO:0003700 | |
| Chy06g02276 | 281 | CDD | homeodomain | 102 | 164 | IPR001356 | GO:0003677 | |
| Chy06g02276 | 281 | Pfam | Homeodomain | 102 | 162 | IPR001356 | GO:0003677 | |
| Chy06g02276 | 281 | SMART | HOX_1 | 100 | 167 | IPR001356 | GO:0003677 | |
| Chy06g02276 | 281 | Gene3D | - | 104 | 168 | - | - | |
| Chy06g02276 | 281 | SUPERFAMILY | Homeodomain-like | 98 | 166 | IPR009057 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g02276 | Chy-Chr6:26696933 | Chy07g00400 | Chy-Chr7:3182409 | 3.06E-98 | dispersed | |
| Chy06g02276 | Chy-Chr6:26696933 | Chy02g02313 | Chy-Chr2:27156129 | 1.16E-13 | transposed | |
| Chy06g02276 | Chy-Chr6:26696933 | Chy12g01399 | Chy-Chr12:18125161 | 8.18E-15 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18245 | PF00046 | Homeodomain | 1.30E-18 | CL0123 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g02276 | - | - | csv:101203410 | 564.303 |