Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02276 ATGATGGAGTGGGAAAAACCTGAGCAGCAAAATCCTTACCATCACCACCACAACCCTCCTCTTTGTGACGATCATCTCCATCACCTCACCGGTACTACCGCAGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGACCAATTGGAGACTCTTCGCAAACAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTTACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGAGGTGGACTCCCACACCTGTCCAGCTTCAGATCTTAGAGCGTATATTCGACCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAACTGGGGCAGCATGGCCAAATTTCTGAGTCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGAAAGCAGCAAAGTGCCGCACCAGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAATCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTAATCAACCCTCTGCACCTTTGGGGGACGACATGTGCTTTCAGAGTCCGGAGATGAGTTCTGAACTGCATTTTCTGGATCCAAACACCAACAAAGCTGATACTTTGTTCCCTTCAAATGGAAGTTTAAAAACGGCAAGAAGCTTCAGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCCGCTGACAGGAAAGATTGAAACTCCAGAGAACTATAGTATCTACCAGCAAGCAGAAGGCTACGACATGACGGAACGACCATGA 846 47.04 MMEWEKPEQQNPYHHHHNPPLCDDHLHHLTGTTAAGALYVKVMTDDQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSAAPAYGESEVETEVESPKDKKTKPVDFQTNQPSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEPLTGKIETPENYSIYQQAEGYDMTERP* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26696933 26699071 - Chy6G128040.1 Chy06g02276 229985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02276 281 MobiDBLite consensus disorder prediction 177 191 - -
Chy06g02276 281 ProSiteProfiles 'Homeobox' domain profile. 98 163 IPR001356 GO:0003677
Chy06g02276 281 PANTHER - 2 278 - -
Chy06g02276 281 MobiDBLite consensus disorder prediction 161 201 - -
Chy06g02276 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 278 IPR044559 GO:0003700
Chy06g02276 281 CDD homeodomain 102 164 IPR001356 GO:0003677
Chy06g02276 281 Pfam Homeodomain 102 162 IPR001356 GO:0003677
Chy06g02276 281 SMART HOX_1 100 167 IPR001356 GO:0003677
Chy06g02276 281 Gene3D - 104 168 - -
Chy06g02276 281 SUPERFAMILY Homeodomain-like 98 166 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02276 - - - csv:101203410 564.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02276 Chy-Chr6:26696933 Chy07g00400 Chy-Chr7:3182409 3.06E-98 dispersed
Chy06g02276 Chy-Chr6:26696933 Chy02g02313 Chy-Chr2:27156129 1.16E-13 transposed
Chy06g02276 Chy-Chr6:26696933 Chy12g01399 Chy-Chr12:18125161 8.18E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18245 PF00046 Homeodomain 1.30E-18 CL0123 Chy TF