Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g02293 | ATGCCTTTTTGTTCTTGTGGGCATTCTAGTAGATCAAATTCTCTTTGGCAATGGCATGTCAAACTTCCGGCAATAATTAGTCGGTCCATTACATTTTACATGGCACCAACATTAGAAGGAATTCAGAAGGTTGAATTGAGTTTTAAAGAAAAGATGAGCACAACACAGATCCCTTTTCAAGAAAAGAAGAAAAAAAAAAAAGAACCAAAAGCTCTCACCGCAAATACTTCGTCGGCGCCTCCACCGGAAGCGGTGGCCTTGGAGTCGGACTTCGTGGTCATTCTGGCGGCTTTGCTCTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCCTGGCTCCGCCGTGGAAATCAGGCATCGGCGAATAGAGGACTGAAGAAGAAGATACTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACGGTGGGAGATGGGAAAATAGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCTTGGAGGGGGAGGAGATCCGACAGTTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTAGGTACTCACTCCTCCTGCCCTTCTTGCCGTCAGATTCTGGTAGTGGCCAGATGTCAGAAGTGCGGCCAGTTTCCGGCGGATGTACAAGGCGGCGCTGCTCACAACAACGAGGAGGAGGAAGTGGAAGATAACAACAACAACAACAACAACAACAACAGGGGTTTGGGGTTTTTGCCTTGA | 741 | 50.34 | MPFCSCGHSSRSNSLWQWHVKLPAIISRSITFYMAPTLEGIQKVELSFKEKMSTTQIPFQEKKKKKKEPKALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGAAHNNEEEEVEDNNNNNNNNNRGLGFLP* | 247 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26825190 | 26826135 | + | Chy6G128210.1 | Chy06g02293 | 230002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g02293 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 201 | IPR013083 | - | |
| Chy06g02293 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 197 | IPR001841 | - | |
| Chy06g02293 | 246 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
| Chy06g02293 | 246 | Pfam | Ring finger domain | 154 | 197 | IPR001841 | - | |
| Chy06g02293 | 246 | SMART | FANCL_C_2 | 151 | 205 | - | - | |
| Chy06g02293 | 246 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 68 | 228 | - | - | |
| Chy06g02293 | 246 | MobiDBLite | consensus disorder prediction | 232 | 246 | - | - | |
| Chy06g02293 | 246 | MobiDBLite | consensus disorder prediction | 57 | 71 | - | - | |
| Chy06g02293 | 246 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 68 | 228 | - | - | |
| Chy06g02293 | 246 | SUPERFAMILY | RING/U-box | 134 | 203 | - | - | |
| Chy06g02293 | 246 | SMART | ring_2 | 155 | 196 | IPR001841 | - | |
| Chy06g02293 | 246 | MobiDBLite | consensus disorder prediction | 220 | 246 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g02293 | Chy-Chr6:26825190 | Chy07g00412 | Chy-Chr7:3251541 | 3.53E-57 | dispersed | |
| Chy12g01273 | Chy-Chr12:17310095 | Chy06g02293 | Chy-Chr6:26825190 | 2.30E-14 | dispersed | |
| Chy06g02293 | Chy-Chr6:26825190 | Chy03g00227 | Chy-Chr3:2130011 | 4.31E-32 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g02293 | - | - | csv:116402645 | 307.76 |