Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00003 ATGCTGTTGGCTCGATTTCTCGCCGTTCTTTTCCTCTCATCTCTCTGCTTTTTCATAACCTTCACTTCCGCCGCCACTCGCCTGCCGCCCGACGAAGTGGATGCGTTGGAGGAAATCGGAAAAACATTAGGGAAGACGGACTGGAATTTCAGGGTGGATCCATGCGGCGGCGTTGCTAGTGGTTGGATATCGGGATCGAATCAATTCGATACTAATTTCGAAAATAATGTCACTTGCGACTGCACCTTCCAAAATAATACCGTCTGTCACGTCACTAACATTCTTCTCAAGGCGCAGAGCCTTCAAGGTACTCTGCCACCACAAATTGTGAGGTTGCCTTTCCTTGAAGAACTTGATCTCACCCGCAACTATCTCAGCGGTCCAATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCATAATTTCCCTGCTTGGAAATCGATTGACAGGTCCAATCCCAAAAGCGATTGGAAACATCACCACTCTTCAAGAGTTGGTTTTGGAAATGAATCATTTCTCTGGAAATATACCTCCAGAACTTGGGAATTTGGCCAACTTATCAAGATTACTTCTTACCTCCAACAACTTTTCTGGGGAGCTACCACCTTCACTGGCTAGGATAACGACATTAACGGATTTTCGAATTGGTGACAATAACTTTACAGGACCAATACCTACGTTTCTTCAGAATTGGACGAATCTTGATAAAATAGCTATTCAGGCAAGCGGTTTGAGTGGGCCAATTCCTTCTGAAATTGGACTATTGACGAACTTAACTGATCTGAGAATCAGTGACTTGAATGGAGGTTCATCGCAATTTCCACCGCTGAATACTTTGACAAAGTTGAAACACCTGATATTAAGGAGTTGCAGTATAACTGGGATGCTGCCTGACAATCTTGCTGGGTTTTCAGCCTTGAAAACATTAGACTTTAGTTTCAACAAAATTACTGGACCAATACCTCGCAGCTTTGAAGCATTAAAAAAAGTTGATAGCATATTTCTTACTGGAAACTTGCTAAATGGATCAGTGCCCAATTGGATGCTAAATCAAGGAGAAAGCATAGATCTCTCTTATAACAAATTTACTCAGAGTCAGAACACTGGTTGCCAATCACGAAACTTAAACCTATTTGCAAGCTCTTCAGAGGACAGTAATTCTGGAACAGTTTCATGTTTAGGCTCCTGTGAAAAAACATGGTACTCTGTCCATATCAACTGTGGCGGGAATGAAGAATTCATTAACGGAACAACCAAATTTGATGCAGACGTAAACACTGGAACATCATCATTGTTTGTTCAAGGTAGAACCAATTGGGGATTTAGCAACACTGGTACTTTTATGGACGATAGTCGCACACCAGATGATTTTATTGTAATAAATTCATCTGCTCTCTCGATGCCAAATCCTGAATTGTACGTCAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCTTGGGTACTGGAAACTACACTTTAAGCCTCCATTTTGCTGAGATAGCATTTACTAATGATGAAACATATAGAAGCCTTGGCAGACGCGTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCCGCTGGTGGAATTGCCAAACCTTTTGTAAAGAAATTCACAGTTTCTGTGACTAATGGTACTGTAGAAATCCGCCTATTTTGGGCTGGGAAGGGGTCAAATGCAATCCCTGTAAGAGGAGTTTATGGTCCTTTAATTTCTGCCATTTCTCTTGATCCTGACTTTGAGCCACCATCAGAAGGTGGAAATGCCATTTCTGCCGGTGCAGTGGCTGGAATTGTGGTTGCTGTGGTCTTTGTTATTCTCTTGGTTCTTGGAGTGCTGTGGTGGAGAGGCTGTCTAAGAAAGCCAAGCACACTTGAGCAAGAGTTGAAGGGTCTAGATCTTGGAACAGGTTCATTTTCATTAAGACAAATCAGAGATGCTACTAATAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTTCAAGGGTGTTCTTGCAGATGGCACCATAATTGCAGTGAAACAACTTTCTTCCAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATCGAAGGAAATCAACTTTTGCTAATATATGAGTATCTTGAAAACAATAGCCTTGCTCGAGCCTTATTTGGACCTGGAGAATCTCAATTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTCGGTATAGCCAGAGGTTTAGCATACCTTCACGAGGAGTCAAGACTTAAGATCGTTCACCGGGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATCTGGACGCCAAGATTTCTGACTTTGGTCTGGCCAAGCTGGACGAGGAAGAAAATACACATATCAGCACTCGGGTTGCTGGAACATTTGGGTATATGGCACCAGAATACGCCATGCGTGGCTACTTAACTGACAAGGCAGATGTGTACAGCTTTGGCATTGTAGCATTGGAGATAGTTAGTGGTCGGAGCAACACAAGTTATCGAACAAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGACAGTTTATTAGAGCTTGTCGACCCACGGTTAGGTTCTGATTTCAACAATAGAGAGGCAATGGCGATGATCAATATTGGCCTCCAATGCACAAACGTCATTTCTGCCGACAGACCAGCCATGTCATCGGTGGTGAGCATGTTGGAGGGGAAGGTTGCTGTGAAGGAGGTGGTTTCAGATCCCAGCATCTCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCGCCAGAAAGGGCAAACGACGAGCGAGAGCCAGACACAAAGTTTGACAATGGATGGACCATGGACTGGTTCTTCAACAACTGCCAGCGATCTCTATCCCATCAACATGGATTCTAAATACTTGGAGAATAGGAACTAG 3024 42.63 MLLARFLAVLFLSSLCFFITFTSAATRLPPDEVDALEEIGKTLGKTDWNFRVDPCGGVASGWISGSNQFDTNFENNVTCDCTFQNNTVCHVTNILLKAQSLQGTLPPQIVRLPFLEELDLTRNYLSGPIPPEWGSTKLLIISLLGNRLTGPIPKAIGNITTLQELVLEMNHFSGNIPPELGNLANLSRLLLTSNNFSGELPPSLARITTLTDFRIGDNNFTGPIPTFLQNWTNLDKIAIQASGLSGPIPSEIGLLTNLTDLRISDLNGGSSQFPPLNTLTKLKHLILRSCSITGMLPDNLAGFSALKTLDFSFNKITGPIPRSFEALKKVDSIFLTGNLLNGSVPNWMLNQGESIDLSYNKFTQSQNTGCQSRNLNLFASSSEDSNSGTVSCLGSCEKTWYSVHINCGGNEEFINGTTKFDADVNTGTSSLFVQGRTNWGFSNTGTFMDDSRTPDDFIVINSSALSMPNPELYVRARISPISLTYYAYCLGTGNYTLSLHFAEIAFTNDETYRSLGRRVFDVYVQGKLELKDFNIADAAGGIAKPFVKKFTVSVTNGTVEIRLFWAGKGSNAIPVRGVYGPLISAISLDPDFEPPSEGGNAISAGAVAGIVVAVVFVILLVLGVLWWRGCLRKPSTLEQELKGLDLGTGSFSLRQIRDATNNFDAANKIGEGGFGPVFKGVLADGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPGESQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLDAKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRTKDDCFYLLDHANTLKEKDSLLELVDPRLGSDFNNREAMAMINIGLQCTNVISADRPAMSSVVSMLEGKVAVKEVVSDPSISKQDVNAMWSQIYRQKGQTTSESQTQSLTMDGPWTGSSTTASDLYPINMDSKYLENRN* 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47337 57735 - Chy7G128330.1 Chy07g00003 230014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00003 1007 Pfam Protein tyrosine and serine/threonine kinase 666 932 IPR001245 GO:0004672|GO:0006468
Chy07g00003 1007 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Chy07g00003 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 292 348 - -
Chy07g00003 1007 Gene3D - 399 589 - -
Chy07g00003 1007 SUPERFAMILY L domain-like 83 363 - -
Chy07g00003 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 381 975 - -
Chy07g00003 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 79 292 - -
Chy07g00003 1007 MobiDBLite consensus disorder prediction 965 990 - -
Chy07g00003 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Chy07g00003 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 79 292 - -
Chy07g00003 1007 SMART serkin_6 663 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy07g00003 1007 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Chy07g00003 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 381 975 - -
Chy07g00003 1007 CDD STKc_IRAK 669 936 - -
Chy07g00003 1007 SUPERFAMILY Protein kinase-like (PK-like) 647 956 IPR011009 -
Chy07g00003 1007 ProSiteProfiles Protein kinase domain profile. 663 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy07g00003 1007 Gene3D Ribonuclease Inhibitor 270 382 IPR032675 -
Chy07g00003 1007 Pfam Malectin domain 402 586 IPR021720 -
Chy07g00003 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 292 348 - -
Chy07g00003 1007 Gene3D Ribonuclease Inhibitor 29 269 IPR032675 -
Chy07g00003 1007 Gene3D Transferase(Phosphotransferase) domain 1 739 948 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00003 Chy-Chr7:47337 Chy07g00454 Chy-Chr7:3565487 0 dispersed
Chy07g00005 Chy-Chr7:95537 Chy07g00003 Chy-Chr7:47337 1.68E-50 dispersed
Chy07g00455 Chy-Chr7:3596943 Chy07g00003 Chy-Chr7:47337 4.96E-08 dispersed
Chy07g00002 Chy-Chr7:38059 Chy07g00003 Chy-Chr7:47337 0 tandem
Chy07g00003 Chy-Chr7:47337 Chy07g00004 Chy-Chr7:79581 0 tandem
Chy01g00873 Chy-Chr1:7804856 Chy07g00003 Chy-Chr7:47337 0 transposed
Chy05g00533 Chy-Chr5:5723517 Chy07g00003 Chy-Chr7:47337 0 transposed
Chy07g00970 Chy-Chr7:14325037 Chy07g00003 Chy-Chr7:47337 0 transposed
Chy10g00188 Chy-Chr10:4643757 Chy07g00003 Chy-Chr7:47337 0 transposed
Chy12g00049 Chy-Chr12:443043 Chy07g00003 Chy-Chr7:47337 3.31E-09 transposed
Chy07g00003 Chy-Chr7:47337 Chy07g00996 Chy-Chr7:14682016 3.12E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71356 PF07714 PK_Tyr_Ser-Thr 6.20E-47 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00003 - - csv:101221782 1877.45