Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00005 ATGACACTGTTATGTAAATATTTGTGTGGATTCTCTATTGTTAAGGGAGTACTATCAGATGGAACTTCCATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAGTTCATCACAGAAGTTGGGATGATTTCTGGATTACAACATCCAAACCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATTTACTGAACAATAATCTTGCTCGTGCACTTTTTAGCCCTGAGAAGCATTCTTTGAATTTGGATTGGCCAATAAGAATGAAGATATGTGTGGGAATAGCAAAGGGTTTGGCTTACTTCATGAAGAATCTAGATTGA 357 35.29 MTLLCKYLCGFSIVKGVLSDGTSIAVKQLSSKSRQGNREFITEVGMISGLQHPNLVKLYGCCIEGNQLLLIYEYLLNNNLARALFSPEKHSLNLDWPIRMKICVGIAKGLAYFMKNLD* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 95537 95978 + Chy7G128350.1 Chy07g00005 230016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00005 118 Coils Coil 113 118 - -
Chy07g00005 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy07g00005 118 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 113 - -
Chy07g00005 118 Gene3D Transferase(Phosphotransferase) domain 1 10 115 - -
Chy07g00005 118 SUPERFAMILY Protein kinase-like (PK-like) 12 114 IPR011009 -
Chy07g00005 118 PANTHER BNAC01G36570D PROTEIN 13 113 - -
Chy07g00005 118 Pfam Protein tyrosine and serine/threonine kinase 20 115 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00005 - - - cmos:111446321 181.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00005 Chy-Chr7:95537 Chy07g00003 Chy-Chr7:47337 1.68E-50 dispersed
Chy07g00004 Chy-Chr7:79581 Chy07g00005 Chy-Chr7:95537 1.90E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g47 . . . . . . . . . . . . . . . . . Bhi09g03550 . . . . . . . . . . . . . . . . . . . Chy07g00005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019270 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71358 PF07714 PK_Tyr_Ser-Thr 7.10E-17 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00005 Chy_Chr07 FPKM 0.0 0.0 0.0 0.0 0.117083 0.582184 0.0 0.128924 0.062045 0.0