Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00008 ATGTCTCGCTTCAGACCTCTTCACTCTCAAATCCAACTCTTCAATTCACAACCCACAATTTCCCTTCAATTTCCCCTTCTTCCTTCTACTTCTCGATCTTTCTCACTGAATATTGGAGAGGGGATTGCACCAGAAATTGTCCCCGGTAAGAGGAATACACCGCCGCCGTTTCTGTGTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCAAGAAGGGAAAGGTAGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTGACGAGGGAGGATGCTTTGCTCCGCAAACAGCTTTCTCCGGATATGGAGATGTTTGTGAGACATTTGTACAAGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGATAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCATGGACGGGATTTTATCAAGTCTGCAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCCTTCTTTGGATGTCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTCTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTCAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTAAACCTAAGTCCGACCGTGTCGAGGAACTAG 834 42.09 MSRFRPLHSQIQLFNSQPTISLQFPLLPSTSRSFSLNIGEGIAPEIVPGKRNTPPPFLCREAANSNGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYKEGYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSPTVSRN* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 102994 105041 - Chy7G128380.1 Chy07g00008 230019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00008 277 MobiDBLite consensus disorder prediction 73 89 - -
Chy07g00008 277 MobiDBLite consensus disorder prediction 50 89 - -
Chy07g00008 277 PANTHER OS01G0203300 PROTEIN 79 270 - -
Chy07g00008 277 PANTHER ZINC FINGER PROTEIN 79 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00008 - - - csv:101222492 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00008 Chy-Chr7:102994 Chy09g00823 Chy-Chr9:10932437 1.90E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g88 . . . Bda09g00549 . . . . . . . . . Car09g00594 Sed04g2474 Cpe06g00523 . Bhi09g03537 Tan01g4293 Cmetu07g0160 . Hepe01g1455 Mch11g0994 . Cla11g01695 Cam11g1762 Cec11g1782 Cco11g1786 Clacu11g1921 Cmu11g1732 Cre11g2140 . Cone9ag0234 . . Lsi04g01993 Csa04g02266 Chy07g00008 Cme07g00516 . . . . . . . . . . Cmo09g00653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012689 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00008 Chy_Chr07 FPKM 2.554205 3.739324 0.0 0.08839 0.091935 0.0 0.16859 0.0 0.0 0.0