Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00013 ATGGATTCTGTGAAATCCTCTGCTCTCACTCCAAGTAAGAGTAAATTGGCACGCACAATTACCAAAGTTCTTCATATTCGAGCTCTAACTGGGATAGCACCTGTCCATGGAACTCAGAAAGTTAAGCCACAAGACAAGATCAGTGATGATTGCACAGCAAGTAAGAGTATAGGTAGTCAATCTGAGTCTTTCGATAGTGTGGAAGAAGAGTTCCAGAATAGAGTCCAATTGCAAGCATTGCTATCAAAATTGTTTGCCAGCATCTCATCAGTCAAAGCTGCATATGCCCAGTTACAGTTTGCTCAATCCCCTTATGATGCTGAAGGTATTCAAGATGCCGATCACTATGTTATCTCAGAATTGAAAGTTTTGTCTGAATTGAAACAGTGTTACCTTAAAAAACAGTTTGATCCTTCACCAGAAACCACAATGCTCTTGGCTGAAATTCAGGAGCAAAAGAGTCTCGTGGGAACATATGACATGATGGGGAAAAGATTGGAATCGCAAGCAAGACTGAAGGGCTCTGAAATTACGTTTCTGAGAGAAAAGATCGAGGAAATTAAAAAACAGAATAGGTTGCTGGAAAAAAGGTTAGATCAAAGTGGGCCAATTCCTGTAACTGGTGATCTTCATTTATCAGAATTAAATGCAAGTCATTTTATTAAAGTTCTCGGGCATACAATCAAGTCTGTTCGAAGCTTTGTCCGTATGATGGTGAATGAAATGAAATCTGCTGGTTGGAATGTTGATGCAGCTGTGACAGAAATTGAACCCGAAACTTGTTATTGGCATAATGATCATAGATGCTTTGCGTTCGAGACATTTGTTTTCAGGGAAATGTTTGATTCCTTCCATCAACCCAATTTCTCTCTCCCAAATGAATCCTTGCCCGAAAAAAGGAAACAAAAACAGTTTTTCTTTACAAGATTTATGGAGCTTAAGCCTAGGAAAACAAAAGATTTTCTTTCACAAAATCCAAGATCAACTTTTGCCAAGTTTTGTCGAGTTAAGTACTTGCGGCTCATTCACCCCAAGATGGAATCATCAATATTTGGTAACTTGGACCAGAGAAGCTTAATCAGCTCAGGTCAATTCCCAGATACAACTTTCTTTAGCACATTTGCAGAAATGGCAAGGTTGGTTTGGCTATTACATTCATTAGCTTATTCCATTGAACCGGAGGCTTCCATCTTTCAAGTACGAAAAGGGAGCCGATTCTCAGAGGTCTACATGGAAAGTGTCATTGATGAAATGTACCTTTCACCAAATTCTGACCCCGTTGTGGCATTCACTGTTATTCCTGGCTTCATGATTGGTAAAACTGCTATCCAATGCCGGGTCTATCTCTCACAATGA 1356 39.6 MDSVKSSALTPSKSKLARTITKVLHIRALTGIAPVHGTQKVKPQDKISDDCTASKSIGSQSESFDSVEEEFQNRVQLQALLSKLFASISSVKAAYAQLQFAQSPYDAEGIQDADHYVISELKVLSELKQCYLKKQFDPSPETTMLLAEIQEQKSLVGTYDMMGKRLESQARLKGSEITFLREKIEEIKKQNRLLEKRLDQSGPIPVTGDLHLSELNASHFIKVLGHTIKSVRSFVRMMVNEMKSAGWNVDAAVTEIEPETCYWHNDHRCFAFETFVFREMFDSFHQPNFSLPNESLPEKRKQKQFFFTRFMELKPRKTKDFLSQNPRSTFAKFCRVKYLRLIHPKMESSIFGNLDQRSLISSGQFPDTTFFSTFAEMARLVWLLHSLAYSIEPEASIFQVRKGSRFSEVYMESVIDEMYLSPNSDPVVAFTVIPGFMIGKTAIQCRVYLSQ* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 140402 141757 - Chy7G128430.1 Chy07g00013 230024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00013 451 Pfam Plant protein of unknown function (DUF641) 74 197 IPR006943 -
Chy07g00013 451 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 449 IPR040225 GO:0009639|GO:0009959
Chy07g00013 451 Coils Coil 177 197 - -
Chy07g00013 451 PANTHER OS01G0203800 PROTEIN 1 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00013 - - - csv:101223201 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02001 Chy-Chr6:23985568 Chy07g00013 Chy-Chr7:140402 1.08E-11 dispersed
Chy07g00013 Chy-Chr7:140402 Chy11g01193 Chy-Chr11:18088883 5.59E-48 dispersed
Chy02g00213 Chy-Chr2:1422664 Chy07g00013 Chy-Chr7:140402 3.19E-141 transposed
Chy06g00255 Chy-Chr6:1713751 Chy07g00013 Chy-Chr7:140402 8.27E-108 transposed
Chy11g01693 Chy-Chr11:23370240 Chy07g00013 Chy-Chr7:140402 3.94E-66 transposed
Chy07g00013 Chy-Chr7:140402 Chy07g00986 Chy-Chr7:14535618 1.28E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g94 . . . . Bpe09g00262 . . Bma13g00926 . Cmo04g00715 . . . Car09g00591 . Cpe06g00521 . . . . . . . . Cla11g01701 Cam11g1767 Cec11g1787 Cco11g1792 Clacu11g1926 Cmu11g1737 Cre11g2145 Cone6ag0199 Cone9ag0229 . . . Csa04g02272 Chy07g00013 . . Blo10g00729 . Bda12g00816 . . . . . . Cmo09g00649 Cma04g00669 . . . . Cpe01g00603 . . . . . . . . . . . . . . . Csa04g00812 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003427 2 3 2 2 2 0 2 1 0 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 5 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00013 Chy_Chr07 FPKM 5.827306 5.838158 17.865665 16.104856 12.190259 13.972265 14.488231 14.804954 15.465689 15.616642