Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00022 ATGGGTTTCCTCGGGTTTGATAAAATGCTTATGCGATTTCATTCATTTCATCTGGATAGTGATCAGGAAGCTCTAAGGAAAATGGTTTGCAGAAGCCATGAGTCTAAGGTCCACAAAAGGGACGAGGATGAAGAAGATGGAGTTGAAGAAGGAGATCAAAAGAAAGTCAAGGTCCACAAAAAGGATGGGGATGAAGAAGATGGAGTTGAAGAAAGAGATCAAAAGAACGTCAAGTTGTGTACCTCTAGTTTGCAGCCAAAGTTAGATCTTGTCCTTACAGCTTCCAACATAAAGACCAAGTATAAGGATGCTACACTTTTACCTAAATGGAAGGCATTCCAGACGCTCATCTTTCTTGAGCAGGATGATGGGCTACATCATTCAAGTAAAATAGCTGCATTCGATTTTGATGGCTGTCTAGCAAACACATCCGTTAAAAGAGTAGGTGCAGAGGCGTGGTCTCTGATGTATCCTTCAATACCACAAAAACTTCAGAGCTTGTACGATGATGGCTACAAGCTGGTAATATTTACGAACGAATCCAACATTGAGAGATGGAAGAACAAGAGACAGGTTGCCGTGGACTCCAAACTTGGGCGTCTCAATAATTTTATTAGTCAAGTCAAGGTCCCAGTTCAGGTGTTTGTTGCCTGTGGAATAGGAAGCAAATCAGGTAAATCTGAAGAAGACATGTTTAGGAAACCGAAACCCGGGATGTGGCATATAATGGAGAGCCACTTCAATGGCGGCATCCCCATTGATATAGACCAATGTTTTTATGTGGGAGATGCAGCTGGGAGAGCCAAGGATCATAGTGATGCTGATATCAAGTTTGCTCAGGCTATTGGGTTGAAGTTTTATGTTCCTGAAGAGTTTTTTGTTGAGTAA 888 41.89 MGFLGFDKMLMRFHSFHLDSDQEALRKMVCRSHESKVHKRDEDEEDGVEEGDQKKVKVHKKDGDEEDGVEERDQKNVKLCTSSLQPKLDLVLTASNIKTKYKDATLLPKWKAFQTLIFLEQDDGLHHSSKIAAFDFDGCLANTSVKRVGAEAWSLMYPSIPQKLQSLYDDGYKLVIFTNESNIERWKNKRQVAVDSKLGRLNNFISQVKVPVQVFVACGIGSKSGKSEEDMFRKPKPGMWHIMESHFNGGIPIDIDQCFYVGDAAGRAKDHSDADIKFAQAIGLKFYVPEEFFVE* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 202309 206101 + Chy7G128520.1 Chy07g00022 230033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00022 295 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 52 294 - -
Chy07g00022 295 Gene3D - 108 295 IPR023214 -
Chy07g00022 295 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 130 286 IPR006549 -
Chy07g00022 295 Pfam Polynucleotide kinase 3 phosphatase 130 293 IPR013954 -
Chy07g00022 295 MobiDBLite consensus disorder prediction 33 74 - -
Chy07g00022 295 CDD HAD_PNP 130 293 - -
Chy07g00022 295 SUPERFAMILY HAD-like 112 293 IPR036412 -
Chy07g00022 295 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 118 293 IPR006551 -
Chy07g00022 295 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 52 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00022 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] - csv:101207352 538.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00022 Chy_Chr07 FPKM 1.7657 1.905188 4.74141 3.442662 3.726007 6.192681 4.987351 8.917002 11.673608 10.490394