Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00041 ATGACTTTTCCAAGTTGGAAAGAGAAGTATAAAGAGTTGGTAGGGGTTCTTGCTACACTATATATATTGGGAGGGAGATCATCATTCTCACAAGAAATGGGAAATCTTCTCTTTTTGTTTTCTTTCTTGTTGTTTGCTCTGATGGTTTCTGGAAACCATGAAACTGGAAGAAATGCGAGTGCAAGAATGATTGTTGGTGAAAAGGGTAGAATACAAAAGGGTAGAATAGGTGCCATTGTAGATTTGAGTTCCAGGATTGGCAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATGTTAACTCCTTGAGCAATCAAAATTTCAGTCTTGTCATTAGAGACTCCAGAAATGACCCCAATCTGGCAGCTCTTGCAGCTAAGGATCTCATAAGTGTACAACAAGTTCAGGCTCTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCGGTACTAGCATTAGCTAATGAAATACCAAAATGGGCAACCGAGAGGTCCAAATTTTTGGTCCAGGCTTCTCCTTCTCAGTTAAATCAAATGAGGGCTATAGCTGGTATTGTCAGTTCAGGGGACTGGCATCTAGTCAATGTTATATATGAAGATAGTGATCTCTCAACCACTGGAGTATTTCTTTATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAGGTCAATTTGTCGGTCTCTCACAGTTTGATTCTGACTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCAAGCAGAATTTTTGTAGTTCATATGTCTTTCAAGTTGGCACTGCGTCTATTTGAGATAGCAAACGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATTCTTTCACAAGCCTTGTACATTCTTTCAATGTTTCTATCAACTCTGGACTACAAGGAGTTGTTGGAGTCAAGAGCTACATCTCAGAAAGAAATCCTCCATATCATGAATTTTATCTTCGATTTTGTCAAAGGTTTAGAATAGAGCATTTTGATGAGCACAACAACGAGCCCGGTATTTTTGCAGTGCAGGCATATGATGCTGCAAAGACAGCAGCTTTGGCAATGAGTGAAATCCAAGATAAGGGTAATGACTTGTTAGATAAAATAAAGCTCACAGACTTTCAAGGACTTGGTGGAAAGATTCAGTTTAAGGATCGAAAATTAGCCCCAGCCGATACTTTTCAGATCATCAATGTGATTGGGAGGAGTTATAGGGACCTAGGCTTCTGGTCTGATAAATTAGGCTTCTCGCAAGATTTGAAGGAAAATTCATCTTCTAGCTTGTTGATGAAGGGACTTGATAACGTGTTTTGGCCAGGTGGATCTTTGAAAACTCCAAGGGGATGGGTTGTACCAACAGATTCCGCCCCTTTGAGAATTGGGGTGCCAACTAATTCCATGTTCAAACAGTATGTACGTGTGGAAGAAGATCCTACGGGAAACAATTTAACCTTCAATGGACTTGCAATTGATCTGTTTAAAGCAATCTTAGACTACCTTCCGTTTGCTCCACATGTCTTCTGTCCTTTCAACGGAACTTATAATGATTTAGTGAAAGAAATCTACTTGAAGAATTTTGATGCAGCTATTGGTGACATAGCAATAACCACAGAACGCGTAGGACACGCAGAATTTACACATCCCTACTCTGAAGTAGGACTGGTGATGATAGTTCCTACCAGAAAAGACACAAGCAACAAAGCATTGTTGTTCACAAAGCCCTTTACAGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTTGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACACCAAGGTTCAATGTTTGATCAAGCTGGAGCCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCATGGCAATAGGCTGCATAGTAACTTATCACGAATGGCTATGGTGGCCTGGCTATTTACGGCACTTGTGATAACTCAGACATACACTGCCAATCTTGCTAGCATGCTCACTGTTCAAAAGTTCGAAGCATCGATATCAAATATCGAGACTCTCCAGAAAATAAATGCATCTGTAGGAAACGGCAAAGGAACCTTTGTCAAGACATATTTGGAAGAAGTTTTAGACTTTCCTGCCGAAAGCATAAAAAGCTACACTACCCCAAACGACCTAGTTGACGCTCTCAGAAACAAGGAAATAGCAGCAGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGGTTTTGCAAGGAATTCATGATTTCTGGACCAACCTACCTTATCGGAGGATTTGGATTCGCATTTCCAAGAGGCTATCCGATGTTACGAGATGTTGACAAAGCACTGCTTGAGGTATCTGAAAGTGGGAAGTATAGAAAGTTGGAGGAAAGCATGATTGGTATGGAGAAATGTGAGGATACGGATGTAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTATACTATTTGTATTGAGTGGAGGAGTATCAACAATAGCATTAACATTGTACACTATCAGTGCTCATAAATCTTGTCTTCAACAGAACGCTATTTGGAGACTAATGTTGGCTGTAATTAAGCGCTGGAGAAATCACAACAGGGGATTTTCTCGCCGAGTAAGCGACCTTCCACAAACCGAACTGAAGAACTTCCCAAAGTCTACAAACTTGCAAATTCAGGTCTAG 2724 40.82 MTFPSWKEKYKELVGVLATLYILGGRSSFSQEMGNLLFLFSFLLFALMVSGNHETGRNASARMIVGEKGRIQKGRIGAIVDLSSRIGKEEILAMHMAIEDVNSLSNQNFSLVIRDSRNDPNLAALAAKDLISVQQVQALIGPQTWEMASVVAEVGNENQIPVLALANEIPKWATERSKFLVQASPSQLNQMRAIAGIVSSGDWHLVNVIYEDSDLSTTGVFLYLVHALKDVGAEVGQFVGLSQFDSDLFSKELEKLRRGSSRIFVVHMSFKLALRLFEIANEMGMMGKDYVWITTDSFTSLVHSFNVSINSGLQGVVGVKSYISERNPPYHEFYLRFCQRFRIEHFDEHNNEPGIFAVQAYDAAKTAALAMSEIQDKGNDLLDKIKLTDFQGLGGKIQFKDRKLAPADTFQIINVIGRSYRDLGFWSDKLGFSQDLKENSSSSLLMKGLDNVFWPGGSLKTPRGWVVPTDSAPLRIGVPTNSMFKQYVRVEEDPTGNNLTFNGLAIDLFKAILDYLPFAPHVFCPFNGTYNDLVKEIYLKNFDAAIGDIAITTERVGHAEFTHPYSEVGLVMIVPTRKDTSNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHQGSMFDQAGAMLCSSFTTLFSLHGNRLHSNLSRMAMVAWLFTALVITQTYTANLASMLTVQKFEASISNIETLQKINASVGNGKGTFVKTYLEEVLDFPAESIKSYTTPNDLVDALRNKEIAAAFLEVPFAKLFLARFCKEFMISGPTYLIGGFGFAFPRGYPMLRDVDKALLEVSESGKYRKLEESMIGMEKCEDTDVKDESSSLSPNSFFILFVLSGGVSTIALTLYTISAHKSCLQQNAIWRLMLAVIKRWRNHNRGFSRRVSDLPQTELKNFPKSTNLQIQV* 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 387960 391302 + Chy7G128710.1 Chy07g00041 230052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00041 907 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Chy07g00041 907 Pfam Receptor family ligand binding region 92 416 IPR001828 -
Chy07g00041 907 Gene3D - 674 773 - -
Chy07g00041 907 Gene3D - 670 806 - -
Chy07g00041 907 Gene3D - 473 594 - -
Chy07g00041 907 SMART GluR_14 475 812 IPR001320 GO:0015276|GO:0016020
Chy07g00041 907 Gene3D - 72 192 - -
Chy07g00041 907 PANTHER GLUTAMATE RECEPTOR 66 901 - -
Chy07g00041 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 66 901 - -
Chy07g00041 907 CDD PBP1_GABAb_receptor_plant 75 436 IPR044440 -
Chy07g00041 907 SUPERFAMILY Periplasmic binding protein-like I 75 466 IPR028082 -
Chy07g00041 907 Pfam Bacterial extracellular solute-binding proteins, family 3 498 808 IPR001638 -
Chy07g00041 907 Gene3D - 384 472 - -
Chy07g00041 907 SUPERFAMILY Periplasmic binding protein-like II 452 807 - -
Chy07g00041 907 PIRSF IGluLR_plant 31 379 IPR017103 -
Chy07g00041 907 PIRSF IGluLR_plant 372 893 IPR017103 -
Chy07g00041 907 CDD GluR_Plant 473 810 - -
Chy07g00041 907 Gene3D - 193 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00041 - - - csv:101209950 1669.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00041 Chy-Chr7:387960 Chy03g01064 Chy-Chr3:14069020 2.46E-140 dispersed
Chy07g00040 Chy-Chr7:379954 Chy07g00041 Chy-Chr7:387960 0 tandem
Chy07g00041 Chy-Chr7:387960 Chy07g00042 Chy-Chr7:400560 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00041 Chy_Chr07 FPKM 16.746416 20.469563 10.271036 12.375759 4.349009 3.184846 4.431259 11.612689 14.456965 17.548727