Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00050 ATGGAGATTGGAGCTGTGAACTCTAAAATGGACACAGCTTCAACTATCACCATCAAAGGCATTCTCAGTCTCCTTGTTCAGAATGCTGATGAGAACAATGGCAGAAGGTTGATTTCCCTTGGTATGGGTGACCCTTCTGCTTATTCTTGTTTTCATACAACCCGTATAGCTCAAGATGCCGTTGTTGATTCTCTTGAATCTGAGAAATTTAATGGCTATGCTCCCACTGCTGGTCTCCTTCAAACTAGAAGGGCGATTGCTGAATATTTATCTCGAGATCTTCCGTATAAGTTGACATCTGACGATGTTTTTATTACGTCTGGATGCACACAAGCGATTGATGTTGCTTTGGCAATGCTTGCTCGTCCTGGTGCAAATATACTGCTTCCAAGGCCTGGTTTCCCAATCTATGAACTTTGTTCTGCATTTCGGAATCTTGAAGTCCGGCACTTTAATCTACTCCCTCAGCAAGGCTGGGAGGTTGATCTTGATGCCATTGAGACCCTTGCCGATAAGAACACTGTTGCATTGGTTATTATCAACCCAGGGAATCCATGTGGAAATGTGTACAGCTATCAGCATCTCAAGAAGATTGCTGAAACTGCGGAAAAGCTTGGAATTCTTGTAATTGCTGATGAGGTTTACGGGCATCTTGCTTTTGGAAGTCGACCTTTCGTACCGATGGGAGTCTTTGGATCAACTGTTCCTGTTCTCACCCTTGGATCTCTTTCAAAGAGATGGATAGTACCAGGATGGCGACTTGGGTGGTTTGTGACTAGCGATCCTTCTGGCACGTTCAGAAAACCCAAGGTTATTGAGCGAATCAAGAAGTATTTTGATATATTAGGGGGCCCTGCAACATTCATCCAGGCTGCAGTCCCTCACATACTCGAGTCAACTGATGAGGTTTTCTTCAAGAAAACAATTAATATTTTGAAGCAAACCTCGGAAATATGTTGCAGAAAGATCAAGGAAATCCCTTGCATTACATGCACACACAGACCAGAAGGGTCAATGGCTATGATGGTAAGATTGAACATTGATCTTCTTGAAGATATCAGTGATGATATTGATTTTTGCTTCAAGCTTGCCAAAGAGGAATCACTCGTCATTCTTCCAGCCATTGGAAATGGAAGTGAAACTGACTTGAAGGTTCCTGTGTTCTCATCATCTTTGGAGTTGCTCGAAAAACTTCACGAGAAATGGAGTTTGGTCAACAAGAAACCGTATCCAGCAATGTATTCCAGTGTTTTTGGTGGGATTATTACAGATCCAGCTATGATGGTGATTCCTATCGATGACCACATGGTTCATCGAGGCCACGGCGTGTTTGATACAGCCATTATTTTAAATGGATATTTGTATGAGTTGGATGCCCACATCGACCGCTTTCTAAGATCGGCTTCAAAAGCAAAGATCTCTCCTCCCTTTCCACGGTCAATTCTTCGGAGCATTCTTATCCAATTGACAGCAGTATCACAGCTCAAGAAAGGCACTTTAAGATACTGGTTAAGTGCAGGACCTGGAGATTTCTTGCTCACGCCTGCCGTTAATGCAAATTCTGCATTCTATGCAGTAGCCATTGACGACGACTTCTCTCAATGCAAAGAAGGGGTTAAAGCAATAACATCCACAATCCCGATGAAGACGCCTCAGTTTGCAACAATGAAGAATGTGAACTACCTACCAAATGTACTAGCCAAACTGGAAGCTGAAGAGAAAGGGGCATTTGCTTCCATTTGGGTTGATGAAGAAGGCTATATTGCAGAAGGTCCAAATGTGAACGTTGCATTTATAACCAATGAAAAGGAGCTTATCTTGCCTTTTTTCGACAAGATTCTCTCAGGTTGCACTGCACTGCGACTTCTTAAGTTAGCTCCGAAGTTGGTCAAGGAAGGGAAGCTGAAGAGTGTTGGAGCTGCAAACCTTACGGTTAAGGAAGCCAAAGACGCTGCCGAAATGATGTTTGTAGGAAGCACACTTCCGCTGCTGCCAATCATCTCGTGGGATGAAGAACCTATTGGAGATGGACGCGTAGGAGAACTGACGATGGCACTTTCTGATCTGATTTGGGACGATATGGTCTCAGGCCCTGAAACAGAGAGAATACCAGTTTCATACACAGAGTGA 2130 43.57 MEIGAVNSKMDTASTITIKGILSLLVQNADENNGRRLISLGMGDPSAYSCFHTTRIAQDAVVDSLESEKFNGYAPTAGLLQTRRAIAEYLSRDLPYKLTSDDVFITSGCTQAIDVALAMLARPGANILLPRPGFPIYELCSAFRNLEVRHFNLLPQQGWEVDLDAIETLADKNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLGILVIADEVYGHLAFGSRPFVPMGVFGSTVPVLTLGSLSKRWIVPGWRLGWFVTSDPSGTFRKPKVIERIKKYFDILGGPATFIQAAVPHILESTDEVFFKKTINILKQTSEICCRKIKEIPCITCTHRPEGSMAMMVRLNIDLLEDISDDIDFCFKLAKEESLVILPAIGNGSETDLKVPVFSSSLELLEKLHEKWSLVNKKPYPAMYSSVFGGIITDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDAHIDRFLRSASKAKISPPFPRSILRSILIQLTAVSQLKKGTLRYWLSAGPGDFLLTPAVNANSAFYAVAIDDDFSQCKEGVKAITSTIPMKTPQFATMKNVNYLPNVLAKLEAEEKGAFASIWVDEEGYIAEGPNVNVAFITNEKELILPFFDKILSGCTALRLLKLAPKLVKEGKLKSVGAANLTVKEAKDAAEMMFVGSTLPLLPIISWDEEPIGDGRVGELTMALSDLIWDDMVSGPETERIPVSYTE* 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 443093 449129 - Chy7G128800.1 Chy07g00050 230061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00050 709 Pfam Aminotransferase class I and II 37 387 IPR004839 GO:0009058|GO:0030170
Chy07g00050 709 TIGRFAM tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase 8 378 IPR005958 GO:0006520|GO:0008483|GO:0030170
Chy07g00050 709 Gene3D - 398 528 IPR043131 -
Chy07g00050 709 SUPERFAMILY PLP-dependent transferases 9 396 IPR015424 -
Chy07g00050 709 Gene3D - 531 698 IPR043132 -
Chy07g00050 709 Gene3D Aspartate Aminotransferase, domain 1 39 385 IPR015422 GO:0003824
Chy07g00050 709 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 417 695 IPR036038 GO:0003824
Chy07g00050 709 Pfam Amino-transferase class IV 442 669 IPR001544 GO:0003824
Chy07g00050 709 Gene3D - 56 301 IPR015421 GO:0003824
Chy07g00050 709 CDD ADCL_like 434 690 IPR017824 GO:0008696|GO:0030170|GO:0046656
Chy07g00050 709 CDD AAT_like 38 382 - -
Chy07g00050 709 PANTHER TYROSINE AMINOTRANSFERASE 7 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00050 K00815 TAT; tyrosine aminotransferase [EC:2.6.1.5] - csv:101212407 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01136 Chy-Chr5:15865901 Chy07g00050 Chy-Chr7:443093 2.24E-12 dispersed
Chy07g00050 Chy-Chr7:443093 Chy11g00922 Chy-Chr11:12615865 2.62E-148 dispersed
Chy07g00050 Chy-Chr7:443093 Chy04g00142 Chy-Chr4:1277971 7.34E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g177 . . . . . . . . . . . Cma09g00841 . Car09g00754 . . . Bhi09g03466 . . . Hepe01g1411 . . Cla11g01733 Cam11g1803 Cec11g1823 Cco11g1829 Clacu11g1962 Cmu11g1772 Cre11g2179 . Cone9ag0197 . . Lsi04g02043 Csa04g02315 Chy07g00050 Cme07g00568 Blo07g00954 . Bda05g00775 . . Bpe03g00842 . . . . Cmo09g00834 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000682 2 4 1 1 1 2 3 3 2 2 2 3 4 2 2 5 3 10 3 3 2 6 3 5 4 3 4 4 2 5 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00050 Chy_Chr07 FPKM 1.474537 1.910632 0.454137 0.099799 0.537323 0.0 0.0 0.0 0.0 0.0