Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00076 ATGGAGGGATCATCTGATCACCTTAGGAACCTGGATGATATATCTGGGGTTTGTGAGGAAGATATACTTGCCGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGTTTGAGGCAATGGTTGGATAAGCCAGGAAGATCAGTGGATGCTCTTGAATGCCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTAATGTCTTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCATTAATAGTCAAATGGCAGAGGTTAAAACATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTGTTATGACCCCTATAAACGCTTTGTCTGAAACTAGTTGCATGCAGTCAAGTTCAATATACGCTGCCCAAGCATCCTTAAATGAAGGGTCTGGGAAATTTAGAAAAAAAGATAGAAGACATATTGAAGAAACAGAAGATAAGGTGCAATCATTTCCCATGAAGCAGATATTGGCCATGGAGACTACATGGTACACCAGCCCAGAAGAGGCTTCTGATAGCCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAATAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGTGAATTATTGCAAAGTGAATTTCTCAATGAACCAAAAGATGATCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACCATTTCATTTCTATGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAATATTGGGTCACGCACGGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATACCTCCTGTCATTAATACTGATTCTGCTGCTCTGGGATCAAGGAAACGATTTAGACCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTTGATGATTGCGCAAAGACAAGTTCAGAGAATGATAGCGAACAAGGCGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATACTTTTTGATGAGAGGTAGAGTAAATAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGCAGTGATGGTAGGGGGTCCGTAGTTTTAACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAACAGACAAGGTGGGTGGATAAGTCCATTCCTGGAAGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTTAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTGTGTTCTCTCAGTTTTGATCGTGATGGAGAATTTTTTGCCACAGCTGGTGTTAATCGGAAGATTAAAGTGTTTGGATATGATTCAATTGTAAATGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCCACCAGGTCAAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGCGGCGTGTATGGTCCATTGACTTCTCATCGGCGGATCCTACAATTTTGGCAAGTGGGAGTGATGATGGATCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGGTCACTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGACATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCAAGCACTCTTGTTTCTGCATCCACTGATAACACTTTGAAGCTCTGGGATTTGTCCATGTCCACATCCCGGGTTGTTGATTCTCCAGTTCAGTCCTTCACAGGCCACATGAATATTAAGAACTTTGTAGGGCTGTCCGTTTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCGTCTACCACAAAGCCTTTCCAATGCCAGCATTGTCTTACAAGTTTCAAATCGATCCTCTTTCAAGTCATGAAATGGACGACTCTGCACAATTTATCTCTTCAGTTTGTTGGCGAAGTCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2511 40.34 MEGSSDHLRNLDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGINSQMAEVKTSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSIYAAQASLNEGSGKFRKKDRRHIEETEDKVQSFPMKQILAMETTWYTSPEEASDSPSSSASDIYRLGVLLFELFCSFSSREEKNRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSELLQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKNIGSRTDLVKDNHLPLNLPSIPPVINTDSAALGSRKRFRPGILTHDIEACGDNLDDCAKTSSENDSEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMATRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMSTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALSYKFQIDPLSSHEMDDSAQFISSVCWRSQSSSLVAANSTGHIKILEMV* 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 701204 707058 - Chy7G129060.1 Chy07g00076 230087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00076 836 PRINTS G protein beta WD-40 repeat signature 592 606 IPR020472 -
Chy07g00076 836 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Chy07g00076 836 PRINTS G protein beta WD-40 repeat signature 719 733 IPR020472 -
Chy07g00076 836 SMART serkin_6 8 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy07g00076 836 ProSitePatterns Trp-Asp (WD) repeats signature. 719 733 IPR019775 -
Chy07g00076 836 SMART WD40_4 608 648 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 569 605 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 795 834 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 694 732 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 741 780 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 651 690 IPR001680 GO:0005515
Chy07g00076 836 SMART WD40_4 520 555 IPR001680 GO:0005515
Chy07g00076 836 SUPERFAMILY WD40 repeat-like 524 833 IPR036322 GO:0005515
Chy07g00076 836 Coils Coil 291 311 - -
Chy07g00076 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 734 - -
Chy07g00076 836 Pfam WD domain, G-beta repeat 697 732 IPR001680 GO:0005515
Chy07g00076 836 Pfam WD domain, G-beta repeat 613 648 IPR001680 GO:0005515
Chy07g00076 836 Gene3D - 501 836 IPR015943 GO:0005515
Chy07g00076 836 Gene3D Transferase(Phosphotransferase) domain 1 34 296 - -
Chy07g00076 836 PANTHER PROTEIN SPA1-RELATED 2 4 836 IPR044630 GO:0009640
Chy07g00076 836 ProSiteProfiles Protein kinase domain profile. 1 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy07g00076 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 657 IPR001680 GO:0005515
Chy07g00076 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 615 652 - -
Chy07g00076 836 SUPERFAMILY Protein kinase-like (PK-like) 16 298 IPR011009 -
Chy07g00076 836 PANTHER PROTEIN SPA1-RELATED 3 4 836 - -
Chy07g00076 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 741 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00076 - - - csv:101205812 1590.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00076 Chy-Chr7:701204 Chy09g01283 Chy-Chr9:14833412 0 dispersed
Chy07g00898 Chy-Chr7:12644991 Chy07g00076 Chy-Chr7:701204 3.72E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00076 Chy_Chr07 FPKM 6.551907 7.959382 21.029816 22.270893 24.933279 22.405336 28.011705 6.613226 5.542574 6.996978