Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00084 ATGGAACAAAACTACTCTGTACCTGAGGCATACCTAGAGTCTGAACAAGATGTCTCTCTCAAGCAAAACTGGAAATCTATCTCAACTCAGTCAACAATCTCAGAAGACGCAAACGGTTGCTTTGATTGCAACATTTGCCTAGACTCAGCAGCTGACCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACAAATGGCTTCATGTTCAAATCTCCAGCAACGAACCCGAAAACACCCAGAACTGCCCTGTTTGCAAGGCTAGCATTACGCCCTCCTCGTTGGTTCCCCTCTATGGGCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAATCTCATTTGGGTATGGCTGTACCCCGAAGACCACCACCGTCAATGAACACACCATCCCATTCCAATTCATCCTCGGCATTGTATCCTAGCCAGGAGTTTCATTCAAACTATATCCGGTCGCCCTCACACCCAATCTATCACCAACAATATTTCCCCCAGGCCACATATGGCAACTTTGCCTCGTACTCACCATCTTATCTTGGTAATGCCGTGATAACGAGTCTGCTAAACCCAACGATTGGGATGTTTGGAGAAACAGTTTTCACTAGAATATTTGGTAGCGTGGATGGGAACTTATTGCCATACCCGCCATACAACAACTCAATCTCAGGAAATGCCAGTACGAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGGGAAACCAGTGTGTGTGAAGATGAGGGGTCCTTTAGGGGCAGTGATTGGGAGGTACCCTTCAAGTGATGGAAATGCCCAAATGGGTGGAATTATCAGGCATAATAGAAAATGCAGAGATATTGTGTTTCTTGTGATCTTTGTTGCTTTCTGGGTGGGGATGATTGTTAACTCAAGCTTTGGATTTAACCAAGGAAACCCATTAAGGCTTACATATGGACTAGACTACAAAGGAAACGTCTGTGGTGATAAGCATGCTAATCCTGGCCTTCGTGAATTGGAGCTTAAATATTGGTTGAATCCTAATCAGGTTTATCAAAGTGGTTTGAAAGACAGTCAATTTAAGTTGGCAGATGCTCGGAGTATATGCTTGATGGATTGCCCGACTCCTTCCGAAGATTCTCTAAACTGGGTTTGTGATTATCCAGAAGGTGAAATACGCCTCTCAATGGATGATTGGATAGACAGGAACTACGATTACTTCGAGTTCCTAACACCTGAGATGAGGAACAGCTCTGTTAACCTTCAGGGTCCTTGTTACCCTGTCATTTTTCCTAGTGTAAATGTTTATTGGAGCTGCCAGTTCCTTGCTCGCCCCTCAAATGTGTCATTAACACATTGGAAAATGAAGGGTGGAATGAACATAGATGCAGATTTGATCATTGATAAATCTATTCATAAGTCAACCAACTCTCGGTCATCTGTGTTAAAGAGATACATGGCGGATATTGGGAAATCATGGCCGGTATTGATCGTTTGTGGAGGAATTTTGCCTCTATTTTTGGCAGTGATTTGGTTGCTAATGATTCGGCATTTTGTTGCTGCAATGCCGTGGGTAACAGTTGTCCTATTTAACATTCTCATCGTATCAGTCACAATGTTTTACTACCTCAAAGCTGGATGGATAGGAAATGATGCTATAACTCCCATCATCGGTGATCATGATCCTTACGTCCACATATTTGGAAGGGAGCTCAATCATATGCGCGCTGCTGCTGTTCTAATGACTTTTGTTATGGTGGTCTCTGTACTTACATCAATTGCCATCATCCGCCGAATCATAATGGCTACATCTGTCCTCAAGGTTGCCGCAAAGGTGATTGGAGAAGTTCAAGCACTCATAATCTTTCCCATCATACCTTATGCCATCCTTGCAATTTTTTATATGTTATGGCTGTCAGCTGCTCTTCATCTCTTCAGCTCTGGTCAGGTTATCCAGAATAATTGCAACTCAAACTGCTGTGCCTATGATCTTGCTTCAAAACTGGTGAACTGCAATCACTGTTGTGGTTATAGCATCCGTTATACTCGTCATATCGACATTGCCATCTTTTTCCATCTATTTGGTTGTTATTGGGCCACTCAATTTTTTGTGGCATGCTCTTCAACAGTAATTGCAGGTTCCGTTGCCTCCTACTATTGGGCTCGTGGTGAAACTTCGCCTGAAATTCCGTTTCTTCCAGTTTTCTCCTCAATGAAACGGCTAGCAAGATATAACCTTGGATCCATGGCTCTCGGTTCCTTGACTGTTTCGTTTATGGAATCAATTCGTTTCATACTTGAGTCTATTCGTCGCAAATTGAAAGTTGCAAGTACTACGCCAGACAGTCGAATTGGCAGAGCAGTACATAATACGTCTCGGTTTTGCCTGAGATGCATAGAGTGGATCATCAAATCTGTTAACCGTAATGCATATATAATGATTGCGATAACGGGCAAGAGCTTTTGCAAGGCGTCTGCTATTGCGACAGAGTTAATCATTAACAACATCCTTCGGATCGGAAGAGTGAATGTGATTGGAGATGTCATTCTGTTCCTTGGGAAGCTGTGTGTCAGCCTCTCAAGTGCTCTTTTTGCATTCCTCATGTTGGATACCCACAAATACAGATCTGCTCATAACAAAATTTCTTCCCCATTGTTTCCTGTCCTGGTTTGCTGGGGCCTAGGCTATGTGGTTGCCACACTTTTCTTTGGAGTGGTGGAGATGTCCATTGATACAATAATTCTTTCCTTCTGTCAAGATTCTGAAGAACATCAAGGCACAGCCCAGTATGCTCCTCCTCTTCTTATGGAGACTCTCAATGATCAAAATGAGATGCAGAGACTTACACAAGGACCTCCAAACCAAAGTTTCAAGAAAATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCTTAGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATCCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAATTCAAATGGGTGAACCTGCACCCGTGGTCACAATTGTTCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG 3213 43.73 MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGHLYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNTPSHSNSSSALYPSQEFHSNYIRSPSHPIYHQQYFPQATYGNFASYSPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMRRQEMQLDKSLNRGKPVCVKMRGPLGAVIGRYPSSDGNAQMGGIIRHNRKCRDIVFLVIFVAFWVGMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLRELELKYWLNPNQVYQSGLKDSQFKLADARSICLMDCPTPSEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSVNLQGPCYPVIFPSVNVYWSCQFLARPSNVSLTHWKMKGGMNIDADLIIDKSIHKSTNSRSSVLKRYMADIGKSWPVLIVCGGILPLFLAVIWLLMIRHFVAAMPWVTVVLFNILIVSVTMFYYLKAGWIGNDAITPIIGDHDPYVHIFGRELNHMRAAAVLMTFVMVVSVLTSIAIIRRIIMATSVLKVAAKVIGEVQALIIFPIIPYAILAIFYMLWLSAALHLFSSGQVIQNNCNSNCCAYDLASKLVNCNHCCGYSIRYTRHIDIAIFFHLFGCYWATQFFVACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMKRLARYNLGSMALGSLTVSFMESIRFILESIRRKLKVASTTPDSRIGRAVHNTSRFCLRCIEWIIKSVNRNAYIMIAITGKSFCKASAIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSALFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQGPPNQSFKKMAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSIQMGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV* 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 756329 767622 + Chy7G129140.1 Chy07g00084 230095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00084 1070 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Chy07g00084 1070 SMART ring_2 43 89 IPR001841 -
Chy07g00084 1070 MobiDBLite consensus disorder prediction 1052 1070 - -
Chy07g00084 1070 SUPERFAMILY RING/U-box 23 96 - -
Chy07g00084 1070 MobiDBLite consensus disorder prediction 104 143 - -
Chy07g00084 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Chy07g00084 1070 CDD RING-HC_AtRMA_like 41 91 - -
Chy07g00084 1070 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 255 949 - -
Chy07g00084 1070 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Chy07g00084 1070 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 255 949 IPR007603 GO:0022857|GO:0055085
Chy07g00084 1070 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872
Chy07g00084 1070 MobiDBLite consensus disorder prediction 1044 1070 - -
Chy07g00084 1070 Pfam Plasma-membrane choline transporter 579 921 IPR007603 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00084 K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5 - csv:101206929 1410.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00351 Chy-Chr1:2543443 Chy07g00084 Chy-Chr7:756329 4.14E-45 dispersed
Chy07g00084 Chy-Chr7:756329 Chy11g01147 Chy-Chr11:17309667 6.38E-40 dispersed
Chy06g01455 Chy-Chr6:15763155 Chy07g00084 Chy-Chr7:756329 5.35E-06 transposed
Chy12g00937 Chy-Chr12:14738974 Chy07g00084 Chy-Chr7:756329 1.03E-44 wgd
Chy02g00299 Chy-Chr2:1963417 Chy07g00084 Chy-Chr7:756329 2.94E-44 wgd
Chy03g01490 Chy-Chr3:17316482 Chy07g00084 Chy-Chr7:756329 2.90E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006813 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00084 Chy_Chr07 FPKM 0.897733 1.037439 1.1082 0.837268 1.722452 1.744553 1.605541 2.63101 3.366754 3.177596