Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00092 ATGATGAACAAATCCGTGGACGAAGACGAAGAAGAAGAGTGTTTCTACGAGTCCCTTGATCGCATTGCTTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGATAGAGATTCAATCGTCAACTCCCCTAATTATGATTCTGAACACCCTTTTCCGATACTCAAATTCCCAATGGCTGTTTCCAACTATGATATTTGGATCTCTGAGCCGGCTTCTGTGTTGGAACGCCGTAGTCGTCTTCTTCGAGAAATGGGTCTTAGCGGCGACCCTTCTCTTTCACGGGCTAATACCGCCTTGGAGTTGGATCATAAAGAAAAGGGTGTTGGCGATTTTGGTCGATCGGTGTCGTCGGATTATTTGACTAGTCAACAACAGCAGCCCCCTGCAATCATCCGCTCCAAATCGGATGGTTCTGCAGACTGTAACAGGAACATGAGCTCTTCACAAGCTTCCGGCAGCGATACTAATAACCAGTGTAATTATTCGTCGTCCATTAATTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCACTACTTCATTTGCAAATAACCGTAATCGTGTAGTTGTTAAGTCCCGAAGCTGTAAGAGTGATGGAGCACCGTCGGTTTCTTTCGCTGCTTCACAGCATAAGCCGCCTTCTGGAAAAAATTGCAGATGGGCGGATGAGATTCGAAGTGATTCTTTGGTTGTGAATGCCAATTCGGATCCTGATCCATCGTTGATGTCTCAGAATGGTGTGAATAGACGAGAGGTTAGCGGGGATTCAGTTTATTCTACTAGTGGAAAGGTCAATGAGGAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTTGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGACATTCACCTATTGTTCAAGAACTGATGCGGCGACAGAATGTGGAAGATGGCTATAATGATAATAACGATTTAAATGCAAATGGGGATACCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGCATAAAGAGTGTTGCTAGCACGGTGAAGGGTCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCTGAGAAAGGTGGACGGAGGTCAAGCTCTGCAACAGATGATAGTCAAGATGTTTCCTTTCATGGACCAGAGAGAGTTAGAGTTCGGCAGTATGGAAAATCAAGTAAAGAACTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTTGAGTCGGAGAAAAAAGGTGATCTACTGATGGAGAAACCTGAAGATGGGAACTTGAGTTTCTTATTTGCAGCTAATGAGTCACCGGAGCCCACTTCATTATCTCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGGAAATCAGTGAGCTTGGAACATGTGATAGTGCCGGACACTGTATTTGGGCTTTCAGAGAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCTAAATCTCAGCATTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAACGATTCCTGTTTGAAAATCTTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGACGATAGATACTTCATTAGTGGATCGTTAGATGCGAAAGTTCGTATATGGAGTATCCCAGATCATCAAGTTGTTGACTGGAGTGACTTGCATGAGATGGTGACTGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCGGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAAAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATCCGAGTGGTTGATGGTGTTGATCTGGTCCAGAGATTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCTGCCTGCCTTTCCTCAAATGGCAGGTATGTGATATCAGCCAGTGAGGATTCTCATGTGTACGTATGGAAGCATGAAGCAGATTCTCGACCTAGTAGGAGTAAAGGTGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAGGATGTCTCTGTGGCTATTCCTTGGCCTGGTATGGGCGATACATGGGGACTTAACGATGATTATTGTGGAGATGACAATGTGATTGAAAACCATATTGATGAAGTCTCCTCCGCTAACCATCCCCCTTCACCTGTGGAGGCTGAAAATGGCAGTGAGGATTCAGTATTGGCATCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACAAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTCATTCTGAACACTCGGAATAACCGTAGCCCTCATTCCAGCATGGACATTGCCAGCGGAATGTTTCAAGGATCATCAGCATGGGGTATGGTGATCGTTACTGCAGGTCTTCGAGGTGAAATCAGAACGTTCCAAAATTTTGGATTTCCAGTTAAGATTTAA 2757 44.36 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSIVNSPNYDSEHPFPILKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHKEKGVGDFGRSVSSDYLTSQQQQPPAIIRSKSDGSADCNRNMSSSQASGSDTNNQCNYSSSINSPSILSFHSVNETTTSFANNRNRVVVKSRSCKSDGAPSVSFAASQHKPPSGKNCRWADEIRSDSLVVNANSDPDPSLMSQNGVNRREVSGDSVYSTSGKVNEEACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGYNDNNDLNANGDTGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEDGNLSFLFAANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSNDSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDHQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSSNGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHIDEVSSANHPPSPVEAENGSEDSVLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLILNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI* 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 814173 823183 - Chy7G129220.1 Chy07g00092 230103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00092 918 Gene3D - 416 774 IPR015943 GO:0005515
Chy07g00092 918 MobiDBLite consensus disorder prediction 811 831 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 369 394 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 23 39 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 492 517 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 402 416 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 366 417 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 334 350 - -
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 464 - -
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 617 IPR001680 GO:0005515
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 464 IPR001680 GO:0005515
Chy07g00092 918 MobiDBLite consensus disorder prediction 200 214 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 332 353 - -
Chy07g00092 918 SUPERFAMILY WD40 repeat-like 427 753 IPR036322 GO:0005515
Chy07g00092 918 MobiDBLite consensus disorder prediction 116 161 - -
Chy07g00092 918 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Chy07g00092 918 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Chy07g00092 918 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Chy07g00092 918 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 918 - -
Chy07g00092 918 PANTHER WD REPEAT DOMAIN 44 7 918 IPR040324 -
Chy07g00092 918 SMART WD40_4 710 751 IPR001680 GO:0005515
Chy07g00092 918 SMART WD40_4 619 657 IPR001680 GO:0005515
Chy07g00092 918 SMART WD40_4 670 709 IPR001680 GO:0005515
Chy07g00092 918 SMART WD40_4 424 463 IPR001680 GO:0005515
Chy07g00092 918 SMART WD40_4 536 574 IPR001680 GO:0005515
Chy07g00092 918 SMART WD40_4 577 616 IPR001680 GO:0005515
Chy07g00092 918 MobiDBLite consensus disorder prediction 196 220 - -
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 583 IPR001680 GO:0005515
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 577 - -
Chy07g00092 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 617 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 23 45 - -
Chy07g00092 918 MobiDBLite consensus disorder prediction 113 161 - -
Chy07g00092 918 Pfam WD domain, G-beta repeat 579 616 IPR001680 GO:0005515
Chy07g00092 918 Pfam WD domain, G-beta repeat 430 462 IPR001680 GO:0005515
Chy07g00092 918 Pfam WD domain, G-beta repeat 725 751 IPR001680 GO:0005515
Chy07g00092 918 Pfam WD domain, G-beta repeat 538 573 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00092 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1781.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00092 Chy-Chr7:814173 Chy08g00759 Chy-Chr8:15296002 1.84E-06 dispersed
Chy07g00092 Chy-Chr7:814173 Chy04g01152 Chy-Chr4:17679012 1.46E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00092 Chy_Chr07 FPKM 0.245014 0.0 0.0 0.0 0.0 0.322298 0.0 0.0 0.0 0.0