Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00104 ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGATTGAGCTTGATCTGGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGGTTCACTTTTTAGTTGGGATTGCAGTGGGAAGAAATTTTGTGCTAAAAGTGGGATATATGTTTCTCACCTCTCCCGATCTAGCCTTCTTGCCATTCTCAATCAATTTATGTATGCAGCGACTTGTCTTCAGTTGACACAGCTCGTATTGCAAGAAGTTAATACACCTGCAAAGTCAGCTCCTCCTACTTTAAGGGCGTTTGTTACGTCTGTTTCTTCCTGGCTGAAGAGGCTGCGTGATACAGCATTGAAGGAGGAGATTAAACTTAATGATGCTGGCTCTGGAACCACTCCTACTTTAATGGGTTTAGCTGGCTCTTTATCGAGTCTTTGTTCAGGTGCTGAATATTTATTACAAATTGTCCACAAAGCCATTCCCAAAGTATTCTTTGAATCCAGTGCTGCAATTACCCCTGCTGATTTGGCAGTTCATGTGCTTGACAACCTTTACAAGAAGCTTGACGAAGTGTGTTTGATACAAAATGGTCAGGAAGAAACTTACCAAATGCTGCTTCATATATTTGTTGGAAGTTTATTGCCTTATATTGAGGAACTTGATTCCTGGGTTTTTGAAGGAATACTTGATGATCCTTTTGAAGAGTTGTTCTTCTATGCTAATGAAGCATTCTCAGTTGATGAACACGATTTTTGGGAAAAGAGTTATTCTTTAAGATCACTGAGGTTGGATGGCGAGGTCAATTTATCAATAAAAAATGAAACAAGCGAAAGAGAATCCATTTCTTTGTCTCATTTGCTGAAGGGAAAAGACCAGTACACTGGAGGCTCAATAGCATGCCCCCTGTTTATGAAGGACATAGCTAAGTCAATAGTTGCTGCTGGAAAGTCTTTGCAGCTCATTCGTCATGTTTGTGAAACATCTCCTGTGTCAGAAAAACAAAATGGTGAAGAGTTTACTGCTAGTGGTGATTTTGGAGGAAGTTTGACGAGGCTATCTTTGTCGGAGCTTTTTTGTGTGTCATTGGCAGGTTTAATTGGTGATGGTGATCGCATATCTAGGTACTTCTGGAAACATGACCAATATAAACTTGAGACTGTTTCCTCCTTCAAGACCCGCACAAACTGTTCTGAAGTAGAAAATGGCATTGATGGGTCAACATGCAAAGGGAAATATTGGTTTAGTTTACTGGTAGATGCATTGGCGCAGAAAGGAAGTGTCAGTTTGAAGTCTGGACACAAGGATGTGAATAAGCCCGTTGGTAAAGGACACAATTATATGACCCTTGATATAAAAAATTGTTTATGCTCTTTGGAATCATTCCACCCTGAAAATCCAGTTATGACAGTGTGCACCGCAATCCTGAAAGATAACATAAATGTTTGGAAAAGATTGAACCTCTCTAGATGTTACAACTTGCCCCCATTAAACGATGAGAGTTTATTGAAGGCAATAATAGGTGATGAGGACACACCCTTTTCTGAAACAAAAGGGACAGATTTTACTTTTGGTTTTCAGTTTGATAAATCCGAACATGTTCATTTGCAAAAAGAAGCAAAGCTGATTGAGACATTGCTTCCTTTTCCCACACTTCTCCCTACATTCCAGGATGATCTCCATATTTCAGATCTCTTGCCCTTCCAGAAGAATAGCACTCTTCCTTCAAGGATTCTAAGCTGGATGCAAAATATCATGCCAAGGACAATGCCACTTACGATGGTCATTATGGAAGAATGCCTTGTTGTATATCTGAGACAGCAGGTGGATTACATTGGCAAACGCGTTTTATCAAAGTTGATGAATGAATGGAGATTGATGGATGAGCTAGCTGTCTTACGTGCTATTTATTTGCTAGGATCAGGGGATCTGCTGCAGCATTTTTTGACTGTAATTTTCAATAAACTGGACAAGGGAGAAACGTGGGATGATGATTTTGAGTTGAATACTATATTACAGGAATCTATAAGAAACTCTGCCGATGGTATGCTATTAAGTGCTCCTGAATCTCTGGTGGTGTCTATTGTCAAAATTAATTCCTTGGATGGCGACGAGCAATCTAATTTAGCGAAACTACCCTCAACCCCACATAAAAGCTCTGCACATTTCTTTGGAATGGATGGACTTGATTCACTTAAATTTACATACAAGGTATCTTGGCCACTTGAGCTTATTGCCAACACCGAGGCAATTAAAAAGTATAACCAGGTGACTGGGTTTTTGTTAAAGGTTAAGCGTGCCAAGTTTGTGCTTGACAAAACTAGGCGTTGGATGTGGAAGGGTAAAGGAACTCCTAAAAATAATAGTAAGCGCCACTGGCTGGTGGAGCAGAAACTCCTCCATTTTGTGGATGCCTTTCACCAATATGTCATGGACAGAGTCTATCATAGTGCATGGCGTGAACTCTGTGAAGGTATGGCTGCTGCACAATCTTTGGACGGAGTTATCGAAGTGCATGAAGCATACTTGCTGACGATTCATAGACAGTGCTTTGTGGTTCCAGATAAGCTGTGGGCTCTTATTGCTAGCCGAATCAATGTTATTCTTGGGTTGGCCCTAGATTTTTACTCCGTGCAGCAGACATTGAGTAGTGGTGGAGCAGTTTCTGCAATTAAGCTTCGGTGTGAAATGGAGGTCGATCGTATAGAAAAACAATTTGATGACTGCATTGCTTTCCTTCTCAGAGTCCTGTCATTCAAGCTAAACGTGGGGCACTTCCCTCACCTGGCAGATCTGGTTACAAGAATAAACTATAGCTACTTTTACATGTCTGATAGCGGGAACTTGAGAACTGCCCCAAGCTCTGAAACCGTTTCTTCCAGACTTGGGAAAGCATTTATGGGAAGAACAGATTAA 2955 40.81 MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTIELDLVRGVLQMLQGFSGSLFSWDCSGKKFCAKSGIYVSHLSRSSLLAILNQFMYAATCLQLTQLVLQEVNTPAKSAPPTLRAFVTSVSSWLKRLRDTALKEEIKLNDAGSGTTPTLMGLAGSLSSLCSGAEYLLQIVHKAIPKVFFESSAAITPADLAVHVLDNLYKKLDEVCLIQNGQEETYQMLLHIFVGSLLPYIEELDSWVFEGILDDPFEELFFYANEAFSVDEHDFWEKSYSLRSLRLDGEVNLSIKNETSERESISLSHLLKGKDQYTGGSIACPLFMKDIAKSIVAAGKSLQLIRHVCETSPVSEKQNGEEFTASGDFGGSLTRLSLSELFCVSLAGLIGDGDRISRYFWKHDQYKLETVSSFKTRTNCSEVENGIDGSTCKGKYWFSLLVDALAQKGSVSLKSGHKDVNKPVGKGHNYMTLDIKNCLCSLESFHPENPVMTVCTAILKDNINVWKRLNLSRCYNLPPLNDESLLKAIIGDEDTPFSETKGTDFTFGFQFDKSEHVHLQKEAKLIETLLPFPTLLPTFQDDLHISDLLPFQKNSTLPSRILSWMQNIMPRTMPLTMVIMEECLVVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADGMLLSAPESLVVSIVKINSLDGDEQSNLAKLPSTPHKSSAHFFGMDGLDSLKFTYKVSWPLELIANTEAIKKYNQVTGFLLKVKRAKFVLDKTRRWMWKGKGTPKNNSKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAQSLDGVIEVHEAYLLTIHRQCFVVPDKLWALIASRINVILGLALDFYSVQQTLSSGGAVSAIKLRCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYSYFYMSDSGNLRTAPSSETVSSRLGKAFMGRTD* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 907672 913140 + Chy7G129340.1 Chy07g00104 230115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00104 984 Pfam Gamma tubulin complex component C-terminal 639 955 IPR040457 GO:0043015
Chy07g00104 984 Pfam Gamma tubulin complex component N-terminal 38 353 IPR041470 -
Chy07g00104 984 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 2 976 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Chy07g00104 984 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 2 976 - -
Chy07g00104 984 Gene3D - 639 954 IPR042241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00104 K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5 - csv:101221298 1897.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00992 Chy-Chr6:7356804 Chy07g00104 Chy-Chr7:907672 4.81E-10 dispersed
Chy07g00104 Chy-Chr7:907672 Chy11g00508 Chy-Chr11:5538816 1.37E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g826 . Blo12g00942 . . . . . . . . . Cma09g00207 . . . Cpe06g00141 . . . . . . . . . . . . . . . . . . . Lsi04g01595 Csa04g02375 . . . . . . . . . . . . . . . . . . . Bhi09g03377 Tan01g4834 . . Hepe01g1732 Mch11g0259 . Cla05g02002 Cam05g2153 Cec05g2170 Cco05g2218 Clacu05g2145 Cmu05g2015 Cre05g2141 . . Chy07g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007705 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00104 Chy_Chr07 FPKM 0.147469 0.784192 0.0 0.152251 0.628829 0.782829 0.380706 0.0 0.0 0.0