Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00141 ATGAAAAATGGGCCTAGTCCATGGTCGAAAAACTTCGGCTCGGCCCAGTCCATTATTAATTTATTTTCGACGAAATTGGATTGTATTGAAGTTGGTTCGTTCGGCAATTCTGCTCACCCTATTCAACTCCTTCCCGCCGCCGTCTCCTTCGGGGCTAAATTTCGTTGTGGTTGCCGCGCTGTTTTTCATCCATCACACCGCCATAAAAATATTCAAACCAAATTGAAAACTGAAACCCTCTTCTCAAGCTCTCAACTCACAATGGTGCTACTCGTCGCATCCTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTCCATACCGGCTCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCACCACATGGTCTTGTTTGTGTAGGTGGAAAGTTTCTCGCATGCTCTCAGCTTCGCGATCCTGCAGCCACTGCTGGCTCCGTTCTCTACTGGTCTTGGTTTAAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACCATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTATGGGAGGTTTTGAGTGGTAGACTGCTTACAAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTATTCTCTGAGGATGACTCCCTGTTAGTTTCTGGTTCTGAAGATGGCTGCATTAGAGTTTGGTCTCTTATAACGGTTTTTGATGATGGTTGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACATTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCGAAGGGGAAGTTGTTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAACATGTCTTTTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTCGGGTCAATATCAAATCAAAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATTAGAGTTTGGGATACAAGAACCAATAACGTTATTCGTGTTTTCAGACATTCCAAAGGTCCTGTAAATAATATACTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGACCACTCTTACCTCCTGCTCTCGCAAAATTTGAAAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTACGGGGTTTTCTTTCCTTAGTTCTCACGTTATGGATGATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGTTACAACACTGGAGAAAAATTTTGGACTGCACCGAGATTTTAGGACTCAAGAAACAGAACGATGCATGCACTATAGAAAGAGAGGAGTTAAGAAAAAAGGCCATTTTTCTTCAGTTCATCAACGTCGGAGATTCCTTTTTCTTTAATCCTATGGAAAATGATGATTTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCATCCTCTGATTTCAGCTCAACTACGACCGATCACCCACATTGCCATTTGGATTCCTCTTCATCGCCTCCATTATTCATCAACAACAACAGTAACAACAGCAACAGCAACAACAACAACCCACCTTATAATTTCCCCCAACAATCTACTGTTCCATTCCCGGGAACCTCCAGTTCACGGTGGCGAAACTCCGGTAGTTGTGAAACAGAGAGTTTGCAGAAACAGAGGTCGGTAGCGGCTATGAGGGAGATGATATTCAGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCCGTGAAGCCACCAAAAAGAAGAAACGTGAAGATTTCAACTGACCCACAAAGTGTAGCGGCTCGACATAGGAGAGAAAGAATTAGCGAAAGAATTAGAATACTTCAAAGATTAGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAAACCCAAGTTCAGTCTCTTGAAAGAGCCGCCGGGAACCGCCCAATCACCGGTGGTGGTGCACCCAGTAGCGTTGGGTTCCCTTTGGAAATGTCAACGGGAAGTTACATCCCTAATCATCATCAATCCCAACCTTGA 2367 43.09 MKNGPSPWSKNFGSAQSIINLFSTKLDCIEVGSFGNSAHPIQLLPAAVSFGAKFRCGCRAVFHPSHRHKNIQTKLKTETLFSSSQLTMVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGGKFLACSQLRDPAATAGSVLYWSWFKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLTKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRKILDCTEILGLKKQNDACTIEREELRKKAIFLQFINVGDSFFFNPMENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHCHLDSSSSPPLFINNNSNNSNSNNNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAGNRPITGGGAPSSVGFPLEMSTGSYIPNHHQSQP* 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1201275 1208892 - Chy7G129710.1 Chy07g00141 230152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00141 788 Gene3D - 302 408 IPR015943 GO:0005515
Chy07g00141 788 Pfam WD domain, G-beta repeat 349 382 IPR001680 GO:0005515
Chy07g00141 788 Pfam WD domain, G-beta repeat 198 235 IPR001680 GO:0005515
Chy07g00141 788 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Chy07g00141 788 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 694 743 IPR011598 GO:0046983
Chy07g00141 788 PANTHER WD-REPEAT PROTEIN 18 89 508 IPR045227 -
Chy07g00141 788 MobiDBLite consensus disorder prediction 582 656 - -
Chy07g00141 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 299 IPR001680 GO:0005515
Chy07g00141 788 Coils Coil 513 533 - -
Chy07g00141 788 SMART finulus 700 749 IPR011598 GO:0046983
Chy07g00141 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 236 IPR001680 GO:0005515
Chy07g00141 788 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 699 752 IPR036638 GO:0046983
Chy07g00141 788 Gene3D - 697 757 IPR036638 GO:0046983
Chy07g00141 788 MobiDBLite consensus disorder prediction 755 788 - -
Chy07g00141 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Chy07g00141 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 385 - -
Chy07g00141 788 CDD WD40 91 382 - -
Chy07g00141 788 CDD bHLH_AtIND_like 695 751 - -
Chy07g00141 788 Gene3D - 65 301 IPR015943 GO:0005515
Chy07g00141 788 SMART WD40_4 196 235 IPR001680 GO:0005515
Chy07g00141 788 SMART WD40_4 249 290 IPR001680 GO:0005515
Chy07g00141 788 SMART WD40_4 156 193 IPR001680 GO:0005515
Chy07g00141 788 SMART WD40_4 343 382 IPR001680 GO:0005515
Chy07g00141 788 SMART WD40_4 293 331 IPR001680 GO:0005515
Chy07g00141 788 Pfam Helix-loop-helix DNA-binding domain 704 743 IPR011598 GO:0046983
Chy07g00141 788 SUPERFAMILY WD40 repeat-like 92 403 IPR036322 GO:0005515
Chy07g00141 788 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Chy07g00141 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Chy07g00141 788 PANTHER WD REPEAT-CONTAINING PROTEIN 18 89 508 - -
Chy07g00141 788 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Chy07g00141 788 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Chy07g00141 788 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00141 Chy-Chr7:1201275 Chy08g00620 Chy-Chr8:14033872 8.38E-25 dispersed
Chy02g01048 Chy-Chr2:7186730 Chy07g00141 Chy-Chr7:1201275 4.61E-35 transposed
Chy04g00200 Chy-Chr4:1768336 Chy07g00141 Chy-Chr7:1201275 1.84E-07 transposed
Chy04g01129 Chy-Chr4:17455304 Chy07g00141 Chy-Chr7:1201275 2.93E-08 transposed
Chy07g00977 Chy-Chr7:14398977 Chy07g00141 Chy-Chr7:1201275 4.14E-44 transposed
Chy11g00181 Chy-Chr11:1770895 Chy07g00141 Chy-Chr7:1201275 1.92E-42 transposed
Chy12g01177 Chy-Chr12:16628998 Chy07g00141 Chy-Chr7:1201275 6.27E-53 transposed
Chy03g01551 Chy-Chr3:17678636 Chy07g00141 Chy-Chr7:1201275 9.78E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18256 PF00010 HLH 8.00E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00141 K14829 - csv:101204364 961.059