Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00148 ATGCTTCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGATTTGGGGATGCTACAACTTCTAATAATTTCACCCCCAAGATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTCCGATTGATGTCTCATACAACTAATCAGCAACACTCCCAAGACGATTCTTCTACTTCCTCTACTCCTAATAATGGATATGAAGCCGTCGCCGATTCCGTCGTTAACAAATTCAAGAAGGTTATTTCTTTGCTTGACCGCAACAGAACCGGCCATGCTCGTTTCAGAAGGGCTCCGGTTCTTACAACAACAACTACTACTACTACTACTACTCCGCCCCCTCCTCCTCTGCCAAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTACCTCCGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGTCCAACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCTCATCAGCCTTCTCATCCATCCAATACCTTTCAAGCCCAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCGCCCCCAATCTCCGCTGCAAATTCGTATATTTCATCGTTAACTGGAGACACCGAAAGTTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACACACATGTCCCAGGTCTCTTCTGCCGGAAAGCCCCCTCTTTCATCCTCTTCGTTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCATCATCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTGATCAGAGTTCCGGCCGTTAGCTCAAAACTTGCGGATATCCCACCAGACGATTACTCCTGGAGAAAGTATGGCCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGATGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAGAACGATCACAATCACGCCCACTCCACCGAAACACCTGCACCGCTTGTTCTCGAATCATCATAA 1182 46.62 MLLLNNNMAVELMVGFGDATTSNNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTTNQQHSQDDSSTSSTPNNGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTTTTTTTTPPPPPLPKVKPQHQDPSSSSPISVPPIQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPSNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAPLVLESS* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1276049 1277663 + Chy7G129780.1 Chy07g00148 230159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00148 393 Gene3D WRKY domain 307 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy07g00148 393 MobiDBLite consensus disorder prediction 59 79 - -
Chy07g00148 393 MobiDBLite consensus disorder prediction 105 150 - -
Chy07g00148 393 SMART WRKY_cls 320 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy07g00148 393 SUPERFAMILY WRKY DNA-binding domain 318 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy07g00148 393 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 393 - -
Chy07g00148 393 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy07g00148 393 Pfam Plant zinc cluster domain 272 318 IPR018872 -
Chy07g00148 393 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 393 IPR044810 GO:0003700
Chy07g00148 393 MobiDBLite consensus disorder prediction 135 150 - -
Chy07g00148 393 ProSiteProfiles WRKY domain profile. 315 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00148 Chy-Chr7:1276049 Chy11g00548 Chy-Chr11:6055556 5.25E-15 dispersed
Chy05g00406 Chy-Chr5:4332849 Chy07g00148 Chy-Chr7:1276049 4.84E-56 transposed
Chy02g00896 Chy-Chr2:5782349 Chy07g00148 Chy-Chr7:1276049 1.01E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18259 PF03106 WRKY 4.10E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00148 - - cmo:103493562 692.189