Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00160 ATGGCTGCTTCTTTTCTTTTCAGAGGTCATCCGCTCCTGCGGTTAGGGCTTAAGCGCCGGGGGCAGTTTACTGGGATTGTGCAAGTGACTTGCCGGTTTTGCTGCAGTGCGACTGCGGCGTCTACTCCATCGGACGGCGACTTAACAGCTGGTGATAATGCTACCTCAGTGGTGAGTGTCAGTGAGCCACCAAAGTACCTAAGATGGGACGAGCCTGATTATCGAAAGTGGAAGAACCAGGAGGAGGAAATTCTTGGCGATATTGAGCCTATCATATTCCTCACTAAAGAGATCCTCCACTCCCATAGGTATGCGGATGGGGAGCAACTGACATTGGAGGATGAGAGAACTGTGGTAGACAGACTTCTGGCACATCATCCACATGCTGAAGATAAAATTGGATGTGGACTTGAATCCATCATGGTCGATCGGCACCCCCAATTTCGGCAATCAAGATGCTTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAATAAATACCCATCGTTTGCAGAGCGACTTCCCACCATGTGCTCTCCAAATCTTACGCATCATACAGTTGGGAGAACCTTGATGGTTAGATTTGGAATTGAGATAATTAGGAAACAGAGGATTGAGCTCTGCAGCTTCTCTAGAGAGACGCTCCCAATACAGAAGCATATGTGTTATGAATATCATCCCCCAAACCCTCCAAATAAAAACACCCAAATTCTCCTATTCTTCCCATCTTTTCTACGACGAGCTGATGAAATGAGAAACTACAGGATGGCCAAACCACATTGTTACCCATCTTTATCAATTTCAACTCACCACAACACTTCCCTTCTTCTTGATTCCCTCTATTGCTTTGAAGATGAGATTGAAGATGGCCATTCCAATTCCCAACCGAAGTTCCAACCTCTCTCAATTAATCTTAACTTCAATTCCCCAAACTCTGTTTTCATGTCGGATTGGGAGGACGATGAATTGGTGTCTCTGTTTTCAAAAGAGAACAGAAATAAGCTTCACAACACTCTCCCACATAATCCTTCTCTAGCTGCAGCTCGTTCCAAGGCTGTTCACTGGATTCTCAAGGTCAATTCTCATTACTCTTTCTCTGCACACACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTTTCCACCCCACATTTTCATATGGAGAAGCCATGGATGACTCATCTCACTGCCATTGCTTCTTTATCTCTCGCCGCTAAAGTGGAAGAAACCCAAGTACCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAAACCATTACAAGAATGGAAATTCTTGTTCTCTCTACACTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTCCTGGATTATATTGTAAGACGTCTCGGCTTCAAAGACCAACTCTGTTCTCAACTCCTCTGTAAATGTGAACGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTCCCATCAGTATTAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCATCTCGCCACAAAATACCACAATCAGCTCATGGGTTTTCTTCAAATCGACAAGGATAAAATGGAGGAATGCTCACGATTCATTTTAGAAGCTTCATGGAAAGGACAGAGAAAGGAATGGAAGAATAATAAACAAAGATTTGGGTTAGTCGACATGTCGTGCAGCTCAAATGGTGGGAATAGGAATGTGGACACTATGGTATCGTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAACATCCGTAG 1833 43.59 MAASFLFRGHPLLRLGLKRRGQFTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSVSEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGEQLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERLPTMCSPNLTHHTVGRTLMVRFGIEIIRKQRIELCSFSRETLPIQKHMCYEYHPPNPPNKNTQILLFFPSFLRRADEMRNYRMAKPHCYPSLSISTHHNTSLLLDSLYCFEDEIEDGHSNSQPKFQPLSINLNFNSPNSVFMSDWEDDELVSLFSKENRNKLHNTLPHNPSLAAARSKAVHWILKVNSHYSFSAHTAVLAVDYVDRFLSTPHFHMEKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSQLLCKCERLLLSVIIDCRFVCFLPSVLATAIIFQVINDIEPHLATKYHNQLMGFLQIDKDKMEECSRFILEASWKGQRKEWKNNKQRFGLVDMSCSSNGGNRNVDTMVSSPETATKKRKIDEQHP* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1346167 1357064 + Chy7G129900.1 Chy07g00160 230171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00160 610 SMART Cyclin_C_2 464 582 IPR004367 -
Chy07g00160 610 Gene3D - 359 462 - -
Chy07g00160 610 PANTHER CYCLIN D3.1 PROTEIN 328 602 - -
Chy07g00160 610 Pfam Cyclin, C-terminal domain 464 562 IPR004367 -
Chy07g00160 610 ProSitePatterns Cyclins signature. 362 393 IPR006671 -
Chy07g00160 610 PANTHER CYCLINS 328 602 IPR039361 -
Chy07g00160 610 Pfam Cyclin, N-terminal domain 352 462 IPR006671 -
Chy07g00160 610 SMART cyclin_7 367 455 IPR013763 -
Chy07g00160 610 Gene3D - 91 177 - -
Chy07g00160 610 MobiDBLite consensus disorder prediction 583 610 - -
Chy07g00160 610 SUPERFAMILY Cyclin-like 465 560 IPR036915 -
Chy07g00160 610 Pfam Protein of unknown function (DUF3223) 96 172 - -
Chy07g00160 610 Gene3D - 463 551 - -
Chy07g00160 610 SUPERFAMILY Cyclin-like 324 462 IPR036915 -
Chy07g00160 610 CDD CYCLIN 362 454 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01061 Chy-Chr6:8577731 Chy07g00160 Chy-Chr7:1346167 3.37E-79 dispersed
Chy07g00160 Chy-Chr7:1346167 Chy09g00691 Chy-Chr9:9112491 1.19E-33 dispersed
Chy02g02499 Chy-Chr2:28448336 Chy07g00160 Chy-Chr7:1346167 8.17E-09 transposed
Chy06g01960 Chy-Chr6:23589927 Chy07g00160 Chy-Chr7:1346167 2.03E-12 transposed
Chy07g00133 Chy-Chr7:1136157 Chy07g00160 Chy-Chr7:1346167 1.15E-31 transposed
Chy01g00082 Chy-Chr1:554313 Chy07g00160 Chy-Chr7:1346167 1.01E-61 wgd
Chy02g00890 Chy-Chr2:5739196 Chy07g00160 Chy-Chr7:1346167 5.87E-74 wgd
Chy03g01563 Chy-Chr3:17786895 Chy07g00160 Chy-Chr7:1346167 5.37E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00160 K14505 - csv:101218302 699.123