Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00162 ATGCTCTACTTATGCCTATTATTTCTCACCACCGCCGCCCAAATCCCCTCCACCTCTCAACAACCATCGCCACCCACCGACATTTTCCTTCTCGCCGGACAGAGCAACATGGCCGGACGAGGCGGTGTCACCAACAGCACCCTCACTCACCACCCCACGTGGGACGGTGTTGTGCCACCCCAATGCTCACCAACCCCTTACATCCTCCGCCTCGCCGCAGATCTCACTTGGGTTGAAGCTCGCGAGCCACTCCACGCAGACATCGATTTTCTCAAGACCAACGGGATTGGGCCTGGCATGCCCTTTGCCAACACCATTGTAATGGATAAACCGGGGGGTCGGACGGTAATCGGTCTGGTACCATGTGCGATGGGTGGGACTTCGATCAAGGAATGGCAAAAGGGATCCAATCTGTACAACCATTTATTGAGCAGAGCCGACGCATCGGTTCTGAGTGGGGGGAAAATTAAAGCGCTTCTATGGTATCAAGGTGAAAGCGATACTGAAAATGCAGAAGATTCGGAGCTGTACGGTGGCAGATTGAAGAAGTTCTTCACTGACATTCGCTCCGATCTGAAGATTCCGTTGCTCCCAATTATTCAGGTGGGTATTGCGTCGGGAGAGGGAGAGTATAAAGAAGGAGTAAGAAGGGGGCAATTGGGAATTGATTTAGTGAACGTGATGATTGTGGATGCATTGGGGCTTTCATTGGAACCAGATGGGCTTCACTTGACCACTCCTTCACAAGTTCGATTGGGCGGGCTTTTGGCTGATGCGTATAGGCGATTTCCATCTCACCCATTGGCTACTCCCTTAACAAATGCTGCTCCTATCTCAAGAATTTCTACCACTTTTCTTTCCATTTGTTGCATTTTTACGTTTTTGTTGCCATTCTTACATCTCATTCTTTTGTAA 915 49.95 MLYLCLLFLTTAAQIPSTSQQPSPPTDIFLLAGQSNMAGRGGVTNSTLTHHPTWDGVVPPQCSPTPYILRLAADLTWVEAREPLHADIDFLKTNGIGPGMPFANTIVMDKPGGRTVIGLVPCAMGGTSIKEWQKGSNLYNHLLSRADASVLSGGKIKALLWYQGESDTENAEDSELYGGRLKKFFTDIRSDLKIPLLPIIQVGIASGEGEYKEGVRRGQLGIDLVNVMIVDALGLSLEPDGLHLTTPSQVRLGGLLADAYRRFPSHPLATPLTNAAPISRISTTFLSICCIFTFLLPFLHLILL* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1367644 1368625 - Chy7G129920.1 Chy07g00162 230173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00162 304 Gene3D SGNH hydrolase 24 262 IPR036514 -
Chy07g00162 304 SUPERFAMILY SGNH hydrolase 26 263 - -
Chy07g00162 304 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 26 260 IPR005181 -
Chy07g00162 304 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 11 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00162 - - - csv:101206765 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00162 Chy-Chr7:1367644 Chy11g01052 Chy-Chr11:15007986 2.70E-35 dispersed
Chy01g00103 Chy-Chr1:675499 Chy07g00162 Chy-Chr7:1367644 2.30E-83 wgd
Chy03g01565 Chy-Chr3:17794467 Chy07g00162 Chy-Chr7:1367644 1.55E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012322 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00162 Chy_Chr07 FPKM 0.905983 0.84268 2.847376 4.744804 3.471934 4.053094 3.056885 3.814542 3.868736 3.836817