Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00171 ATGGCGGATAAGGAGAATATATTTCGATTCACCAGAGCTTCTAAGAAGAGAGCCGCCGACGCTGCTGCTACCCTCGACGACCGCTCCTCTAACAAGAGGAGAGTCGTTCTTGGTGAGCTTCCTATTTTACAGAATGCTTCTTCTTCCTTCGATCGTAAGTCCAGGTCTAGAGCTACCAGGCATAGACGGAGAGTAAAATCCAAGGACACTGCTGGCACCAGTGCTGCTGCTGAAATCAATACACTTCCCCAAGCCGAAGGTGATGTCAAGTTATCTGATGAGGCCAATTCTGAAGACCCGCAAATGTGCAGGGTTTACGCTTCTGATATTTATGAATATCTTCGTGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTGCAAAATGATATTAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTGTCCCTAAATGCAATCAGCAGGCAAAAACTCCAGTTGGTGGGCGTTTCTGCTATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACGATAAAGACCTTTTTAAGGAGATTCACATTGGTTGCTCAAGAGACTTACGAGTTTAATACCTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTTAAATTCTTACCGTCTCTTGTTGCTGCATCTGTTACGTTTCTAGCACGATTTATGATTCAAACCAAGAAGCATCCATGGACTTCCAGATTGGAGCATTTTACTGGATATAAACCAGCTGATATGAAGGATTGCATTCTACTTGTACATGATTTATACCTTAGCAGAAGAGGAGGCGCTTTGTCAGCTATAAGGGAGAAATACAAACAGCACAAGTTCAAATTTGTGTCTGTAATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1131 41.73 MADKENIFRFTRASKKRAADAAATLDDRSSNKRRVVLGELPILQNASSSFDRKSRSRATRHRRRVKSKDTAGTSAAAEINTLPQAEGDVKLSDEANSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQNDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTLVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVTFLARFMIQTKKHPWTSRLEHFTGYKPADMKDCILLVHDLYLSRRGGALSAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1422202 1424360 - Chy7G130010.1 Chy07g00171 230182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00171 376 MobiDBLite consensus disorder prediction 48 96 - -
Chy07g00171 376 ProSitePatterns Cyclins signature. 142 173 IPR006671 -
Chy07g00171 376 Gene3D - 109 359 - -
Chy07g00171 376 PIRSF Cyclin_A_B_D_E 3 367 IPR039361 -
Chy07g00171 376 SUPERFAMILY Cyclin-like 98 237 IPR036915 -
Chy07g00171 376 SUPERFAMILY Cyclin-like 240 365 IPR036915 -
Chy07g00171 376 Gene3D - 123 238 - -
Chy07g00171 376 PANTHER CYCLIN-A3-1-RELATED 24 374 - -
Chy07g00171 376 CDD CYCLIN 141 230 IPR013763 -
Chy07g00171 376 Pfam Cyclin, C-terminal domain 240 363 IPR004367 -
Chy07g00171 376 SMART Cyclin_C_2 240 363 IPR004367 -
Chy07g00171 376 SMART cyclin_7 244 332 IPR013763 -
Chy07g00171 376 SMART cyclin_7 147 231 IPR013763 -
Chy07g00171 376 CDD CYCLIN 240 331 IPR013763 -
Chy07g00171 376 PANTHER CYCLINS 24 374 IPR039361 -
Chy07g00171 376 Pfam Cyclin, N-terminal domain 109 237 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01169 Chy-Chr3:14889634 Chy07g00171 Chy-Chr7:1422202 7.42E-93 dispersed
Chy04g00342 Chy-Chr4:3059342 Chy07g00171 Chy-Chr7:1422202 3.21E-97 dispersed
Chy07g00171 Chy-Chr7:1422202 Chy07g00389 Chy-Chr7:3102293 3.57E-55 dispersed
Chy01g00109 Chy-Chr1:706935 Chy07g00171 Chy-Chr7:1422202 3.23E-100 wgd
Chy03g01569 Chy-Chr3:17814419 Chy07g00171 Chy-Chr7:1422202 5.57E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00171 K06627 - csv:101207493 707.597