Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00175 ATGAATTCATATTCTGCCACTCTCCTCTGTTGTCTACTTGGTCTTAATCTGCTAGCAATGATTCTTTCCTCTTCTGTGGACTCCAGAGATTTAGACTATCAGCAACGCCCTGTGATTCTTCCTCTCTATATCTCGCCCACGAATTCTTCTCATCGCCGCGTTTTGGACCGTGATCACCGTCTCCGGCACCTGCAGAACCTAGTCAAGCCCCACTCTTCAAATGCTCGAATGAGGCTCCACGATGATCTCCTTACCAACGGGTATTACACGACTCGTTTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGATACCGGAAGTACTGTGACATACGTTCCATGTTCTAACTGCGTACAGTGCGGGAATCATCAGGATCCAAGGTTCCAACCAGAGTTGTCTAGCACATATCAACCTGTAAAGTGCAATGCTGATTGTAACTGCGATGAGAACGGAGTCCAGTGTACATACGAGAGACGGTATGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGATGTCATGTCATTTGGAAAAGAAAGTGAACTTGTACCCCAGCGTGCTGTCTTTGGCTGTGAAACTATGGAAAGTGGTGATCTTTATACCCAACGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGTTGTGAGCAATTCATTTTCATTATGTTATGGAGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGGTATTTTCCCACTCAGACCCATCTCGAAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAACCATTGAAGTTGAATCCGAGGACTTTTGATGGGAAGTATGGTGCTATCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTCAAGGATGCTATAATGAAAAAAATTAGTTTCCTGAAACAAATCAGTGGTCCTGACCCGAATTTCAAAGATATTTGTTTCTCTGGTGCTGGAAGGGATGTCACTGAACTTCCAAAAGTTTTTCCAGAGGTTGATATGGTTTTTGCCGATGGACAGAAAATTTCACTTTCTCCAGAGAACTACTTATTCCGGCATACGAAGGTTAATGGTGCATATTGTCTGGGGATCTTTAAAAATGGGAATGATCAGACAACACTTTTGGGAGGAATTATTGTTCGTAATACTCTTGTCACTTATAACCGAGAGAACTCCACAATTGGGTTTTGGAAGACTAACTGTTCTGAGCTGTGGAAGAATCTGCATTATCTTTCTCCTGTGCCTCCGCCAGCTCCTTTACCTTCCCATGTTCCGAATACAAGTAAAGAAGTTCCTCCACCTGGTTCTCCAAGTGTGCCATTTCTTTCTGGTGAATTTCAGGTTGGAGTGATAACATTTAATATGATGCTTCATGTCAACCAATCCTCCGTGAAGCTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAACTTGAAGTTAGTGTCTCACAGGTTCACGTGCTGAACTTTACGTCAGGGGAAACTGATATCTTCATTAGATGGGCTATCTTCCCTGCTGACTCGGCCGGTTATATATCTAATTCCACGGCGATGGACATAATTTCTCGCTTGAAGGAACATGAATTGCAACTTCCTGAAAAATTCGGAAGTTATCAGCTGGTTGAATTGAATGTTGAACCCCCGTTAAAGAAGACATGGATGGAGCAACACTTCTGGTCTATAACGACTATTGGAGTAGCAGTTACCTTAGTTGTTGGATTGGCCGCCGGAAGCACATGGTTGATTTGGAGATATAGACGGAGGGACATGAGTTCCTATGAGCCTGTTGGCGTAGTAGGACCCGAGCAAGAGCTTCAGCCGCTGTAG 1920 44.11 MNSYSATLLCCLLGLNLLAMILSSSVDSRDLDYQQRPVILPLYISPTNSSHRRVLDRDHRLRHLQNLVKPHSSNARMRLHDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVQCGNHQDPRFQPELSSTYQPVKCNADCNCDENGVQCTYERRYAEMSTSSGVLAEDVMSFGKESELVPQRAVFGCETMESGDLYTQRADGIMGLGRGTLSVMDQLVGKGVVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFSHSDPSRSPYYNIELKEIHVAGKPLKLNPRTFDGKYGAILDSGTTYAYFPEKAYYAFKDAIMKKISFLKQISGPDPNFKDICFSGAGRDVTELPKVFPEVDMVFADGQKISLSPENYLFRHTKVNGAYCLGIFKNGNDQTTLLGGIIVRNTLVTYNRENSTIGFWKTNCSELWKNLHYLSPVPPPAPLPSHVPNTSKEVPPPGSPSVPFLSGEFQVGVITFNMMLHVNQSSVKLNITELAEFIANELEVSVSQVHVLNFTSGETDIFIRWAIFPADSAGYISNSTAMDIISRLKEHELQLPEKFGSYQLVELNVEPPLKKTWMEQHFWSITTIGVAVTLVVGLAAGSTWLIWRYRRRDMSSYEPVGVVGPEQELQPL* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1439782 1445564 + Chy7G130050.1 Chy07g00175 230186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00175 639 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Chy07g00175 639 PANTHER ASPARTYL PROTEASES 20 477 IPR001461 GO:0004190|GO:0006508
Chy07g00175 639 Pfam Xylanase inhibitor C-terminal 273 426 IPR032799 -
Chy07g00175 639 ProSiteProfiles Peptidase family A1 domain profile. 89 427 IPR033121 -
Chy07g00175 639 SUPERFAMILY Acid proteases 85 436 IPR021109 -
Chy07g00175 639 Gene3D Acid Proteases 70 252 IPR021109 -
Chy07g00175 639 Gene3D Acid Proteases 261 436 IPR021109 -
Chy07g00175 639 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 20 477 - -
Chy07g00175 639 Pfam Xylanase inhibitor N-terminal 89 253 IPR032861 -
Chy07g00175 639 CDD pepsin_A_like_plant 88 431 IPR034161 -
Chy07g00175 639 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Chy07g00175 639 PRINTS Pepsin (A1) aspartic protease family signature 300 311 IPR001461 GO:0004190|GO:0006508
Chy07g00175 639 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00175 - - - csv:101208466 1243.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00175 Chy-Chr7:1439782 Chy11g00208 Chy-Chr11:1963460 0 dispersed
Chy12g01078 Chy-Chr12:15869215 Chy07g00175 Chy-Chr7:1439782 3.85E-11 dispersed
Chy07g00175 Chy-Chr7:1439782 Chy04g01999 Chy-Chr4:25794776 9.91E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00175 Chy_Chr07 FPKM 3.596182 2.64187 0.0 0.0 1.753864 3.534853 1.986045 0.0 0.0 0.0