Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00183 ATGGCTCTTGAAGCTCTGAATTCTCCTACAACTCCATCACCAGCTCTTCACTACGACGACCCAAGCCTCAATTCATTTGAGTCTTGGTCTAAGCGGAAGAGAACTAAGCGTCCACGTGGATTTGATAACCCTCCTACTGAGGAAGAGTATTTAGCCTTATGTCTCATCATGCTTGCTCGTGGTGGCGCAACCGCTAATTCTGATTCTGATCACCCACTTGACTATGAAGTTCCAATTCCTGCTCAACCCATATCTGTTGTTAAACTTAGTTACAAGTGCTCTGTTTGTGACAAAGCTTTTTCGTCTTATCAAGCTTTGGGTGGACATAAAGCTAGCCACAGAAAATCAGCTACAGGAGAAGATCAATCCACTTCCTCCACCACAACTACTTCCGCCACCGCTACTGCCACCGCCACCGTCGCTGGAGCTAAATCCCACCAGTGCTCTATTTGTCACAAGTCTTTTCCCACCGGTCAAGCCTTAGGCGGTCACAAACGTTGCCACTACGACGGCGGACTCAGTAACAACAACAATCACACGCAGAGTCATCCTAACAACAACAACAACAACAACGCCGCCACTGCGCCCGTGACATCGTCCGAAGGAGTTGGGTCTACTCACACACAGAGTCACAGCCACCGTGACTTTGACCTTAACCTCCCAGCCTTGCCGGAGTTATCACCGGGATTCTTTATCTCTGCCGGGGACGACGAGGTTCAAAGCCCATTACCCCTGAAGAAGCCTCGTCTATTAACAATTCCTAAAATTGAGATTTCTCAAAATTAA 786 48.09 MALEALNSPTTPSPALHYDDPSLNSFESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATANSDSDHPLDYEVPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTSATATATATVAGAKSHQCSICHKSFPTGQALGGHKRCHYDGGLSNNNNHTQSHPNNNNNNNAATAPVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRLLTIPKIEISQN* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1499732 1500517 - Chy7G130130.1 Chy07g00183 230194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00183 261 PANTHER ZINC FINGER PROTEIN ZAT10 1 253 - -
Chy07g00183 261 Gene3D Classic Zinc Finger 89 168 - -
Chy07g00183 261 MobiDBLite consensus disorder prediction 172 220 - -
Chy07g00183 261 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Chy07g00183 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Chy07g00183 261 SMART c2h2final6 91 113 IPR013087 -
Chy07g00183 261 SMART c2h2final6 146 168 IPR013087 -
Chy07g00183 261 MobiDBLite consensus disorder prediction 1 18 - -
Chy07g00183 261 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Chy07g00183 261 SUPERFAMILY beta-beta-alpha zinc fingers 91 168 IPR036236 -
Chy07g00183 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 253 IPR044653 GO:0003700
Chy07g00183 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
Chy07g00183 261 MobiDBLite consensus disorder prediction 172 207 - -
Chy07g00183 261 MobiDBLite consensus disorder prediction 1 44 - -
Chy07g00183 261 MobiDBLite consensus disorder prediction 108 131 - -
Chy07g00183 261 Pfam C2H2-type zinc finger 146 170 - -
Chy07g00183 261 Pfam C2H2-type zinc finger 91 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02057 Chy-Chr6:24755337 Chy07g00183 Chy-Chr7:1499732 7.37E-13 dispersed
Chy07g00183 Chy-Chr7:1499732 Chy11g00851 Chy-Chr11:11990716 5.25E-18 dispersed
Chy01g00126 Chy-Chr1:817502 Chy07g00183 Chy-Chr7:1499732 9.71E-65 wgd
Chy03g01585 Chy-Chr3:17884367 Chy07g00183 Chy-Chr7:1499732 2.14E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18264 PF13912 zf-C2H2_6 2.00E-11 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00183 - - csv:101221218 469.929