Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00185 ATGGCCTCGGCGGAGCAGCCTCTCAAGAAGCGGCGAAACTACGGACCAGCCGCTCCAGAACCATCGCCCCCACTTCCCCAGTTGCCTCAGCCACCGCCACCGCAAATCCCAGCGACTGACCAGACTTCCATCGCTCCATCGCCTCCCACTCCACCTCAGCTCTCTCAAGCCGAAATTCTCCTCAGGAGAAGGAACAGAGATGAAATTAGAAGCGTCTACGAATGTTTTAAGCGAATTAGGTTCTTCCTTTCTCAGAAAGAGAAGGGCGCTCCCACACCTGATATTGAGCAGGCTTATCTTTCTCTCATCACTGCTTCGAGAGGGTGCACCAGTGTAAAGCGTATTGTGGCTGACTTTATTCCTCGATACGCGCCTCATTGTCCGACTGCTCTTGAAGCTGCAACAAAAGTTATCATCAATATGCACAATCAGAGCTTGGGAATAATAAGTAATGGGGAGGATGTTGATAATGTTGCGTTTGAGACAGCAAGGGATTGTATTATTGGTTTAGTTGATATTTGTGCTGCTGTCATGTCTAAGGCATCTACATCATCTGTCATCAGAGGCATTTGCTTTGAAGTTTTTCAGAATGTTTTCACCTTTTTTGTGTCATCTTTTGAGGGAAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAGAATTCAAGATTCTGCAGATGTTTTCACTGAGTTAAAGCAGAAGTATACTGATGAAAATATTTTGCCTGTGATTAAACTTTCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCTGCTTGCTTTGAGCTTTTCAACATGGCTGCCGAGGGAAATCACAAGGACGGGCAGTATTTTCTAAATCAGATTGTGCTTGGGCTGGATGTTGACATCACCCATCATTTGGATAAAAGAAGTGAGAACCAGACAAGCCCAAAATACTGCAAGGATGATGTTAAGGAACAAGTTTCAGTCAGTAGCCACTTCTCCGATGATGCATCATCTGTTTCAAGAAACTGCATGTTGAGCTTGGTTATGGGGAAAGATCAATCATTTCGAAACTGGATGTTTACACAGTATAAGAGGCTCCGTGATCTGCCGTCCTTTAGGGCTTTAGCAGACATAGCATCTTCTCTGGAGGGAATTTTTGAATCATTTTCTGAGCTAATGAACAATGAAGATACTCAAGTAAATATAGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGTAATAGAGGTGAAATTTCCATTGAACTATCTGATAAAAGGAGAAAATTGAGACATTGTGATTCCCTTGAAGATGGTTTCAATACTAAAGTGACTAGTCAGCATTTTTCGTCAATTCCTATTGATTGCAAGCACACCACGTGTTCTGATTTTGATGCTGGCAGCTTGAGATCCATGGCATTTGATGTTCAGGAGCCTGGAGGTTTGCTACATGGAAGTTTGCCCCAGTCGCTGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAGCATAATTCTTTTGAATGTACAAAGCATTCAATTGACGGGAATCAAGTTTCAGGTGTTGACCGCAACTTTCCTGCTCAGAGATTGTCTTCTGGAGATATCAATAATGATCTTGTGCCTCCTAGGCATCAACTATCGGTGCCATGTAGTTCTACAACTTGTCAGAGTTTGTGGTTTTCAGATGGAGATTCATCAGCCATGGATATCTTTTCTGCTTCCAAACAGCTATGGGTGGGCCTTTTAGGCCCTGAGGTTTCTGAAGGTCACATAAGGTATCAATTGGAGAGGTTTGGTTACATCGGACATTTCTTCTTCTTTCCATTAAAAAAGTTTGCAGTGGTGGAATATGGTCACATCATTGACGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTAGGAACTAGGGGTTCCACTCACGGGGTTGCAATTGGTTCCAGTTTGCATGTTTATGTTGGAAATGTTTTGAGCTACTGGGTGAAGGATGAGATTCTGCATGAGACAAGGAAAGCACTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAACGAGGGAGCATTGCTGATGGAATTTGAGACTCCGGAAGAAGCTGCAGTTGTAATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGACACCTCCAAATGCAGGACAAATGAATATTGCACCTCCTTATTTAGATGGTGGAAGATCTGCTTGTGCCCCTGGTGGTGGTAACATGAGAAGCAACAATCCTGGGAACATGCCCAGTAGTATGGTTGGTTCACCTCATGCTCCAATGGTACCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGTTATCTTCCTTGCTTTATACGCTGCGTGCAAAATACAACATAAATCAAAATTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACATCAATGAGGGAAGAAGACAGATCTCCTACTAGCTCTCTCTGGGTTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAGGATATGCAATCTTGCCATCAGCAATACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTACAGGTGGGCTGTGGTTGGTTTGTTGAGTGCAGTAGCGTAGATACTGCTATCACTGTCTTGAAGAATCTCCGTAGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTTCACCAGGAAGGTTCCACACAACACCTTTTCTGAGGAACCATGATAGTTGTGCTGTGGAGCTTCCCTCTCCCAGAATATTACACGAGAATCATGCAATACCTCAGCAAGGTGGATATTCCTATCAGTCAAACTGGGCTCCTTCTGGTCATACGGAGATACTTGAAATAGGGGTTGGAAAGACTGATGCTTGTGAAAAAAACGTGCTGATAGATCATCCACAAGGTGGTCACATGGTGTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCCGCTCCACCACCTCCACCTCAGATTCAGCCACCTCCATTTGTTCGATCTCCATACCCTCCTCCAAACAGTTCTTGGGATGCAAGGGGTTTAAGCCATCCTTTGCCTTTAAATCCAATATCACCAAATGTCATACCTAATTCTTATCTGGGTAATTCTGTTGCATGCTCTCCCTTTTTACCCGCTTCCGTGACACCTCTTTCTCAGATACAAGGAACTCCGATGCAGCATCTAGACCATGTTTTCCCCCATTCTGTTGCTCCACCTTCAATATCATCTCTACCACCTTCCCAGCCAGAGATGCCTCCTCCTATACCTCCATCCCCACCACCTTTGCCTCATTCACAACCACCTAATATTCCCCCTCCACCCAGTTCTCCTCCGCCTCCACCTCCACCCTTAGCTGCCACAGGAGCCAGTGAAGTAGAGCAGCATGTTCAGTATCAATGGAAAGGAGCACTTTGTAAAAGCGGGGTTCAATATTGTTCAATTTATGCACAAAGAGTGGATTCCCAAACTTGCAAATACTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAACGCACAGATTTTAAGCATGTGAAGTCGACTTTCACCAGCACGTCACCAAGTAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGTTGGAGACCATAAAGGATTTCAAGATTTTGTATCGTACTTGAAGCAGAGGGATTGTGCAGGAGTAATAAAGATACCGGTCACTAAATCACTATGGACAAGGCTTCTCTTTATACTTCCATATTCACAGGACTCATGTTCTCTGCTCTCAATTCCTCCAGGTCCACCAGATAGCCTAATTGCCTTGGTTCTTCCCAAAGAAACAAACTTCGAATGGGTTTGA 3918 43.49 MASAEQPLKKRRNYGPAAPEPSPPLPQLPQPPPPQIPATDQTSIAPSPPTPPQLSQAEILLRRRNRDEIRSVYECFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCTSVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLGIISNGEDVDNVAFETARDCIIGLVDICAAVMSKASTSSVIRGICFEVFQNVFTFFVSSFEGKDIFQIVDKEALRIQDSADVFTELKQKYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMAAEGNHKDGQYFLNQIVLGLDVDITHHLDKRSENQTSPKYCKDDVKEQVSVSSHFSDDASSVSRNCMLSLVMGKDQSFRNWMFTQYKRLRDLPSFRALADIASSLEGIFESFSELMNNEDTQVNIDEEMSDSLKHSTRNRGEISIELSDKRRKLRHCDSLEDGFNTKVTSQHFSSIPIDCKHTTCSDFDAGSLRSMAFDVQEPGGLLHGSLPQSLDPLSKHDHLSYAKTSLDLQHNSFECTKHSIDGNQVSGVDRNFPAQRLSSGDINNDLVPPRHQLSVPCSSTTCQSLWFSDGDSSAMDIFSASKQLWVGLLGPEVSEGHIRYQLERFGYIGHFFFFPLKKFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSLHVYVGNVLSYWVKDEILHETRKALNKGPYMVSDLGNEGALLMEFETPEEAAVVMAHLRQHRREKNIHWTPPNAGQMNIAPPYLDGGRSACAPGGGNMRSNNPGNMPSSMVGSPHAPMVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRSPTSSLWVSFPNFNSPFVTDEELMRICNLAISNTGSVVRMTRASVQVGCGWFVECSSVDTAITVLKNLRSCPGIFLRIEFSSPGRFHTTPFLRNHDSCAVELPSPRILHENHAIPQQGGYSYQSNWAPSGHTEILEIGVGKTDACEKNVLIDHPQGGHMVSGTIPCLPISTMGPPAPPPPPQIQPPPFVRSPYPPPNSSWDARGLSHPLPLNPISPNVIPNSYLGNSVACSPFLPASVTPLSQIQGTPMQHLDHVFPHSVAPPSISSLPPSQPEMPPPIPPSPPPLPHSQPPNIPPPPSSPPPPPPPLAATGASEVEQHVQYQWKGALCKSGVQYCSIYAQRVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFKHVKSTFTSTSPSKREICQLIPSSVGDHKGFQDFVSYLKQRDCAGVIKIPVTKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWV* 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1513004 1520093 + Chy7G130150.1 Chy07g00185 230196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00185 1305 Pfam SPOC domain 1152 1281 IPR012921 -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 1011 1037 - -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 1090 1151 - -
Chy07g00185 1305 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1304 - -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 17 53 - -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 1099 1146 - -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 1011 1030 - -
Chy07g00185 1305 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1304 - -
Chy07g00185 1305 Gene3D - 573 657 IPR012677 -
Chy07g00185 1305 MobiDBLite consensus disorder prediction 1 55 - -
Chy07g00185 1305 SUPERFAMILY RNA-binding domain, RBD 569 642 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00185 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101209442 2424.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00185 Chy_Chr07 FPKM 24.26288 25.050459 28.034788 25.757343 25.543362 24.910149 21.695492 26.333889 28.896013 27.009426