Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00186 ATGTCTAATCGTTACAACCACGATGGAAACAAGGGTTTAAGGAAGGACCAAAAGAAGTACATCCCAAAGAATCAAATTCAATCCACAAATGAACTCCCCAACCCTAAACCTACCCTTTCGACTTCTCTCAAACAATCCCTGCCTAACCCATCCGGTTCTACTGCCGCGCCATCAATGAGTAGGATTCAAATGGGTGCTAACGGAGATTGGGTATCTAGCAGAGCTAGTGGTGGCAGTTTCGTGAATTACTTGCCACAGGACGAGGCTGTTGCCACTGGTCTTCGTGCCGAAGAAGGAGCATTGGATCCGGTTGAATCTCAAAGAGTCGTCGACCTTTTGAACAGGGAGTTGTCTCGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGAGAGAAGTGGCTATGGATACTTCCTTGCATGAATTCCTCGATAGCTTCCTAAAATTCAGGACTAGGTGGTATGATTTTCCACATCGTGGAGCAAATGGAACAGTTGCAGGTGTCATCATCGGAGAAAATGAATTAAGCCGCCGTGTTTTCATGGCATTATACCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGTCCTTCTGCAGGAAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATAGTCACGAGAATGAAGATCTAACTAGAATACTGGTCGACAATGCTATAAAATCCCAGCCTAGTATTCATGAAACTTTACCATCAGTTATATCTCATTTCCTCAGAATTGTCTCTATGATGCATGAAAGGTGCAGCTCATCTCTTGAGACTGTCTTCTCCTCGAGTAGCCATGGAGGAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCAATGATGCAATTGTCAGTCTGGACTCTTTCGTCACTGCATACAGACTGGCAGCTATATTCTTCTGCTCTGCTGTTGAAATACGTTGCGGGAATGAGGATTTGCTTGGAATGTTAGCAAGGTTGCATGATTTACTACTTCCATCTTTACAGCAGGGATTTCAAATTGTCCTCACGCCCCAAGGAGATGAAATGATCTCTAATGTTGCAACAAGTTTGAAAATGCTAGCATTAAGAATTGTGAGTTTTGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTTGGAAATGACCTCCCTATTCCAGTCTCTATGAAGATGTTCCCTGCGAATGTAGAAGATCCTGTCATAAGAGCAGATATCTTGATTCAAACTTTGAGAGAAATCAATGGAATCTCGCAACAGGCTTCAGATAAACAACTTGGTCAAACATTTCTCCAGCGTATGGAAAAGAACCACTCCATAATGAACAGAATCAACAGTTTACGAAACAATGGATGGATGTTTGTCGATGATGAACAATTTAATTATCTATCAACGATAGTTATGTATACCCCCACGTCTGATATTAAGGATCCATCTCTTTCCAAGGCCCCTGTGATAAGCCACATATCAGAAGTAGATGAGGATGCTGCAATGCTGGAGTCGAAAATCTGTCAAGTCAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTGTAGCTGCATGTCTGGTAGCTTATAATCAGAATCCCGAAGAAGTTATTCAACGAATCCTTGAGGGAACTCTTCATTCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCAGTGCCCAATTCTAGTGCGACTGCTAATAACAGGAAAGATAAAGGAAAAGGAAAACTGTTTGAGCCTTCAACAGATCCCTACAACGATCAAGTCTCTCGTGGTAAAGATTTACCATCTGAAGGCCCTTCAGTTTCATCAACTTCTGTTGGCAGATTTGTTCGGAAGTCTAAAGATGATGTGCCGTACTCAGAGACCCTTGACAGTAGAAATGAAGCAGATTCAGTGAGAACTGCAGCTTTAATTTCTCAATATGAGTATGAAGATGAATATGATGACTCTTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAGGATAATGAAGACTTGGTAGGTCAAAAGCCAAGTTCCCATTTAGGTAGCTCAATGAACTCAACAAATGGAAGCTCAGCCCAAAATGCTCCCAACTCGAAGTGGGGATCTAGAAGAACACCACAATACTACGTCAAGGATGGTAAGAATTATAGTTACAAAGTTGCAGGGTCAGTTGCAGTTGCCAATTCTGATGAGGCATCTTTGGTAACTCAAGCTCAGAAAGAACTCATTTATGGACTTGGACGCGGAGGCAACTTACCCCTCGGTGCAGTAAAAAAACTGACAGAGTCTCAGCAGGATAGCCAACCTGATGTTTCTGCAGTAGACCCAAGAGATAATGTACGCAAGTCTTGGGGAAGAGGAAGGAGGGAAAGGGAAAGGGAAAGTGGAGCAGCTCCAGGCATGCCTGAAGGAGAAGGTAAACAACCAAATGTGGCTGAGGTTTCAGACAGGGGGGGAAGGGGCGGAAACAGAGGCCGTGGAAGGAGAGGAGGCGGCGACCATCACAGGAAGGATAGAGCCATGAAAAAGCATTTTGCTGGATTGTCTGGTTTCTAA 2604 43.43 MSNRYNHDGNKGLRKDQKKYIPKNQIQSTNELPNPKPTLSTSLKQSLPNPSGSTAAPSMSRIQMGANGDWVSSRASGGSFVNYLPQDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWREVAMDTSLHEFLDSFLKFRTRWYDFPHRGANGTVAGVIIGENELSRRVFMALYRMSSNRDPGARAADSLSLKDHGVLLQEKKLLDLPKLLDICAIYSHENEDLTRILVDNAIKSQPSIHETLPSVISHFLRIVSMMHERCSSSLETVFSSSSHGGSGYSKLQADFLEVIDFINDAIVSLDSFVTAYRLAAIFFCSAVEIRCGNEDLLGMLARLHDLLLPSLQQGFQIVLTPQGDEMISNVATSLKMLALRIVSFGWKLLEICYLGDEVFGNDLPIPVSMKMFPANVEDPVIRADILIQTLREINGISQQASDKQLGQTFLQRMEKNHSIMNRINSLRNNGWMFVDDEQFNYLSTIVMYTPTSDIKDPSLSKAPVISHISEVDEDAAMLESKICQVKDLFPEYGSGFVAACLVAYNQNPEEVIQRILEGTLHSDLQSLDTSLETMPVPNSSATANNRKDKGKGKLFEPSTDPYNDQVSRGKDLPSEGPSVSSTSVGRFVRKSKDDVPYSETLDSRNEADSVRTAALISQYEYEDEYDDSFDDLGISIAETATEDNEDLVGQKPSSHLGSSMNSTNGSSAQNAPNSKWGSRRTPQYYVKDGKNYSYKVAGSVAVANSDEASLVTQAQKELIYGLGRGGNLPLGAVKKLTESQQDSQPDVSAVDPRDNVRKSWGRGRRERERESGAAPGMPEGEGKQPNVAEVSDRGGRGGNRGRGRRGGGDHHRKDRAMKKHFAGLSGF* 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1521385 1528992 + Chy7G130160.1 Chy07g00186 230197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00186 867 MobiDBLite consensus disorder prediction 791 814 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 22 59 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 680 721 - -
Chy07g00186 867 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 10 866 - -
Chy07g00186 867 ProSiteProfiles CUE domain profile. 517 560 IPR003892 GO:0043130
Chy07g00186 867 SMART cue_7 517 559 IPR003892 GO:0043130
Chy07g00186 867 Gene3D - 516 560 - -
Chy07g00186 867 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 10 866 - -
Chy07g00186 867 SUPERFAMILY UBA-like 517 575 IPR009060 GO:0005515
Chy07g00186 867 MobiDBLite consensus disorder prediction 571 647 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 776 867 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 1 59 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 571 585 - -
Chy07g00186 867 MobiDBLite consensus disorder prediction 691 720 - -
Chy07g00186 867 CDD CUE_ASCC2 519 558 IPR041800 -
Chy07g00186 867 Pfam CUE domain 524 559 IPR003892 GO:0043130
Chy07g00186 867 MobiDBLite consensus disorder prediction 627 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00186 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101221453 1596.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00186 Chy_Chr07 FPKM 18.784056 19.855522 16.891182 16.558304 21.056366 21.877792 21.108513 25.085379 23.645348 23.759426