Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00203 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGAGGCCGATACGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTAGAGACCGCCGTGAAAGATGGTATTCTCGGTGGCGGCGGTGGAGGCGGTGGGTTAATTTGTGAGGGCGGAATGACTGAGAAACTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTAGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCTAATATCTTGAAATGGTTCTCACTTGGCCATATCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAGAAGTATTTGGCTATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGATACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGCCAAGTTGTAGCTTTGAATTCGGCGAAGAACACTGTGGAAGAAAATGGTGGTGTTGCTTTGATTTCATCTTTGTTGGGTCCTTTCACATCCCACGCTGTTGGCTCTGAAGCCCTTGGGATTTTGGTGAACTTGGATCTTGATGCCGAGTCACGGAGAAACCTTGTTCAACCTGCTAAGATTTCATTAATGGTGGACATGTTAAACGAGGGATCCACAGATACCAAAATCAACTGCACCAGATTGATTGAAACGTTGCTCAATGGGGATGATTGTGGAGCGGACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTGAGATTAATCAAAGAAAAGAAACACCAAAATGGTGTTCTCGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTGAGGAACTCATTAGTGAGCATTGGGGCAATCCCTCAGTTGATCGAAATTCTCCCGAATTTCGACCCTGAATGTTTGGAACTTGCCCTTCACGTATTGGACTCACTCTCATCTCTCTCAGAGGGGAGGGTGGCGTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTCAAATTATTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATTCTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGTGGTTGCAACCCTGTTCTGAAACAACGCTCCGCTGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCACTTCATATCCAAGTGGTTCTTTTTCTTCTCCTTCTTTCTTTTTCCATCTGGTGATGGATCAATCAAAGTGGGGGTGAGTTTTGAAGTCTCACCATTGTAA 1422 46.06 MPMYQPSGRRREADTELGLGGGGQVLDVETAVKDGILGGGGGGGGLICEGGMTEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVALNSAKNTVEENGGVALISSLLGPFTSHAVGSEALGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLNGDDCGADTVSSLSLLVGLLRLIKEKKHQNGVLAGLRLLKALCSQEPVRNSLVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATHFISKWFFFFSFFLFPSGDGSIKVGVSFEVSPL* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1647917 1649668 + Chy7G130330.1 Chy07g00203 230214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00203 473 Gene3D - 144 443 IPR011989 -
Chy07g00203 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Chy07g00203 473 SUPERFAMILY ARM repeat 239 436 IPR016024 -
Chy07g00203 473 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Chy07g00203 473 PANTHER WDSAM1 PROTEIN 42 445 IPR045185 GO:0061630
Chy07g00203 473 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 445 - -
Chy07g00203 473 SUPERFAMILY RING/U-box 64 140 - -
Chy07g00203 473 MobiDBLite consensus disorder prediction 1 21 - -
Chy07g00203 473 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Chy07g00203 473 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Chy07g00203 473 CDD RING-Ubox_PUB 74 116 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00203 Chy-Chr7:1647917 Chy05g00202 Chy-Chr5:1692654 8.70E-32 dispersed
Chy03g01606 Chy-Chr3:18012602 Chy07g00203 Chy-Chr7:1647917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00203 - - csv:101223113 831.247