Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00206 ATGGCGGCCATTACTTCCACTTGCAGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTTAGAACTTCTTCACCAAGCCATGGCTCTCCATCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTGCAACGACTGAGGACGATGGCGATGAGGGGAACGACATCCCCTTGATTCCGAACGACGGAAATCTTCGACAGGATGGCACTGCAGAAGGAGAAATCGTTGAGTTTCGTAGGCCGGAACCTGGGTTCACGTCGGCCGAAATCCAAGAGCTTTGGTCTCTACTCGAAGATCCAGCCAGGTCCAACTCTGGTTCACAAGACTCGTTTCAAGCCATATCTTTGATCGACGTCGAGAGAAGACGAAAGCGAATGATATCAAACCGAGAGTCAGCTAGACGGTCGAGGTTGAGGAAGAAGAGACATTTGGAGAATCTAGCAATCCAAACGGACAGGTTGAAGATGAAGAATCAGGAGCTGAAAAGGCAGCTGAATTTAGTGGTGAACCGTTGTTTTATGGTAAGAAGACAAAATGAAGGACTATGGTCGGAATTTGTAGCACTTCATGCACGGCTATCGGACCTTCACCGGATTTCTGTTCCCATGCAGGAGAAGGAGAATTCATGCATGCAAATATCATTCAATCATTTCTCTTGA 726 46.97 MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATTEDDGDEGNDIPLIPNDGNLRQDGTAEGEIVEFRRPEPGFTSAEIQELWSLLEDPARSNSGSQDSFQAISLIDVERRRKRMISNRESARRSRLRKKRHLENLAIQTDRLKMKNQELKRQLNLVVNRCFMVRRQNEGLWSEFVALHARLSDLHRISVPMQEKENSCMQISFNHFS* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1661637 1667573 + Chy7G130360.1 Chy07g00206 230217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00206 241 CDD bZIP_plant_GBF1 144 194 IPR045314 GO:0003700|GO:0006355
Chy07g00206 241 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
Chy07g00206 241 Gene3D - 141 195 - -
Chy07g00206 241 Pfam bZIP transcription factor 143 194 IPR004827 GO:0003700|GO:0006355
Chy07g00206 241 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 146 161 IPR004827 GO:0003700|GO:0006355
Chy07g00206 241 Coils Coil 166 193 - -
Chy07g00206 241 PANTHER PROTEIN, PUTATIVE-RELATED 4 93 - -
Chy07g00206 241 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 188 IPR004827 GO:0003700|GO:0006355
Chy07g00206 241 PANTHER PROTEIN, PUTATIVE-RELATED 4 93 - -
Chy07g00206 241 SUPERFAMILY Leucine zipper domain 143 194 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00206 - - - csv:101211417 286.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00206 Chy-Chr7:1661637 Chy10g01085 Chy-Chr10:15951534 3.44E-12 dispersed
Chy09g01294 Chy-Chr9:14902181 Chy07g00206 Chy-Chr7:1661637 6.41E-08 transposed
Chy09g01457 Chy-Chr9:16066041 Chy07g00206 Chy-Chr7:1661637 1.17E-10 transposed
Chy02g00819 Chy-Chr2:5182341 Chy07g00206 Chy-Chr7:1661637 4.64E-15 wgd
Chy03g01611 Chy-Chr3:18037713 Chy07g00206 Chy-Chr7:1661637 3.60E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g618 . Blo12g00994 . . . Bpe04g00147 . . . . . Cma09g00304 Car01g01382 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01464 Csa04g02497 . . . . . . . . . . Sed01g3816 Cmo01g01831 Cmo09g00304 . . . Car09g00256 . . Bhi09g03203 Tan01g4672 Cmetu09g0436 . . . . . . . . . . . . . Chy07g00206 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013825 0 2 0 0 1 1 2 1 1 1 0 0 1 1 1 2 0 2 0 1 0 1 1 1 1 1 0 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18268 PF00170 bZIP_1 1.20E-10 CL0018 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00206 Chy_Chr07 FPKM 2.289308 1.629781 1.01475 0.722536 1.566072 0.533617 0.569531 0.0 0.024341 0.0