Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00208 ATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAGAATAAGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCCCACCGCTTCTGTGACGACGACGACCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAAAGAGTGTACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATCTGGGTTTGGAGGGTGGATGACGACGAACTTCTTTTGTAATTTGTCTTGTAAGCAATTGACGGCGCTTGACACTTGGTTATGCTCTGAAATGGAAAATCTGTCTCAGTCCTCAGGTGGACAGTTTCGACCAGTTATCCCAGCTCAACCAGGCCAGGCATTCATTTCATCATCTGCCCAACAGTTTCAGTTAGCAGGGCAGAATATATCTTCATCAAATGTTGGAGTGCCAGCTGGTCAAGGCCAGCCACATCAATATCCTCAATCAATGCCGCAGTTAGTGCAAAGACCTGGCCATCCCAGCTATGTCACTCCTTCGTCCCAGCCCATTCAAATGCCTTATGTTCAGACAAGGCCGCTTACTTCTGTTCCGCCTCAGTCCCAGCAAAATGTGGCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACTTTCCAGCCAATGTCACAAATGCATGCGCCTGTTAGTGTTGGTAATAGCCAACCTTGGCTGTCTTCTGCAAGCCAGACTACAAACCTTGTCTCACCAATCGATCAAGCTAACCAGCATTCTTCTGTTTCTGCTGTAAACCCAGCTGCCAATGCTCCTGTGTTCAATCAGCAGTTGTCATCTGATTGGCAAGAGCATGCATCAGCTGATGGAAGAAGATATTATTACAATAAAAAAACCAAACAGTCTAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGGGCCGATGCATCAACCGTGTGGAAGGAATTTACTGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACGAAGGAATCAAAATGGACCATGCCAGAAGAATTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCCACCCAAGGAACACAAACAGATATATCTGTTACGGCACCTCAACCTACACCTGCTGCGGGTCTCTCCCACGCTGAAACACCAGCAATTTCTTCTGTTAACTCTAGCATTTCTCCTTCGGTATCTGGGGTTGCAACGAGTCCAGTTGCTGTCACTCCTTTTGTTTCTGTATCCAATTCTCCTTCAGTGATGGTTACTGGATCATCAGCCATTACTGGCACACCCATTGCTTCAACAACTAGTGTGTCTGGAACAGTTTCTTCTCAATCTGTTGCTGCTTCTGGAGGTACTGGTCCCCCTGCTGTGGTCCATGCCAATGCTTCGTCAGTAACTCCTTTTGAAAGTCTTGCCTCTCAAGATGTCAAAAATACTGTCGATGGGACTTCCACAGAAGACATTGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAATGAAACCGTTCTGGAGGAAAAATCTGCTGATGATGAACCATTAGTATTTGCCAACAAGCAGGAGGCAAAGAATGCATTTAAAGCACTTCTGGAATCGGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCCATGCGAGAAATAATTAATGATAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCATTTCATGAGTATTTGGGACATAGAAAAAAATTGGATGCTGAAGAAAGACGCATAAGACAGAAAAAAGCTCGCGAGGAGTTCACCAAGATGTTGGAAGAGTCTAAGGAACTCACATCGTCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAGCGGTTTAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTCGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAAATTCCTTGAGTCATGTGATTACATAAAGGTTAGCAGCCAGTGGCGAAAAGTACAAGATCGGTTGGAAGATGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAAGAGGAAGAGGATCAGAAGAAGATACAGAAGGAACGTGTTCGACGAATTGAAAGAAAAAACCGTGACGAGTTCCGCAAACTCATGGAAGAACACATTGCTGCTGGTGTTTTTACTGCTAAAACTTTCTGGCGTGATTACTGTTTGAAGGTTAAGGAATTGCCTCAGTATCAAGCTGTTGCTTCAAATACATCTGGCTCAACACCAAAGGACTTATTTGAGGATGTTCTAGAGGATTTGGAGAATAAGTATCATGAAGAAAAAACTCAGATAAAAGATGTGGTGAAGGCAGCGAAGATAACCATCACTTCATCATGGACATTTGATGACTTCAAGGCTGCCATTGAAGAGAGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGAACGTGCCAAAGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTCAACGTCTAGCTGATGACTTCTCAGGACTGCTCCAGTCACTCAAGGAGATTACAACTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAAAGTGAAGAGTATAGATCAATCGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGAGGAACACATCACACATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAACGAGAGGAAAAAGAGAAGCGGAAGGAAAAAGAGCGTAAGGAGAAGGACAGAGAACGTGAAAAAGAAAAGGGGCGGGTCAAGAAGGATGAAACAGATAGTGAAAATGTAGATGTGAGCGATACTCATGTCTACAGAGAAGACAAGAAAAGGGACAAAGACAAAGATAGGAAACATCGGAAGCGACATCATAGTGCCACTGATGATGGTGCTTCTGATAAAGATGAGAGAGAGGAGTCTAAGAAGTCCCGCAAACATGGCAGTGACCGAAAAAAATCAAGGAAGCATGCATATTCACCTGAATCAGACAGTGAGAATAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGCTCCCGTAGAAATCATGATGAACTTGAAGATGGGGAGCTTGGCGAGGATGGTGAAATTCAATAG 3324 44.49 MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHRFCDDDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKNCKLKKNKSGFGGWMTTNFFCNLSCKQLTALDTWLCSEMENLSQSSGGQFRPVIPAQPGQAFISSSAQQFQLAGQNISSSNVGVPAGQGQPHQYPQSMPQLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVNPAANAPVFNQQLSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVTAPQPTPAAGLSHAETPAISSVNSSISPSVSGVATSPVAVTPFVSVSNSPSVMVTGSSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEDQKKIQKERVRRIERKNRDEFRKLMEEHIAAGVFTAKTFWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVLEDLENKYHEEKTQIKDVVKAAKITITSSWTFDDFKAAIEESGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLQSLKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFEEHITHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKGRVKKDETDSENVDVSDTHVYREDKKRDKDKDRKHRKRHHSATDDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ* 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1675951 1688742 - Chy7G130380.1 Chy07g00208 230219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00208 1107 ProSiteProfiles FF domain profile. 759 822 IPR002713 -
Chy07g00208 1107 MobiDBLite consensus disorder prediction 950 1107 - -
Chy07g00208 1107 Pfam WW domain 304 332 IPR001202 GO:0005515
Chy07g00208 1107 Pfam WW domain 348 373 IPR001202 GO:0005515
Chy07g00208 1107 Gene3D - 286 343 - -
Chy07g00208 1107 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 127 1101 - -
Chy07g00208 1107 ProSiteProfiles WW/rsp5/WWP domain profile. 301 334 IPR001202 GO:0005515
Chy07g00208 1107 MobiDBLite consensus disorder prediction 950 1023 - -
Chy07g00208 1107 CDD WW 305 334 IPR001202 GO:0005515
Chy07g00208 1107 SUPERFAMILY FF domain 544 605 IPR036517 -
Chy07g00208 1107 ProSiteProfiles FF domain profile. 552 606 IPR002713 -
Chy07g00208 1107 SUPERFAMILY FF domain 886 955 IPR036517 -
Chy07g00208 1107 SMART ww_5 343 375 IPR001202 GO:0005515
Chy07g00208 1107 SMART ww_5 302 334 IPR001202 GO:0005515
Chy07g00208 1107 Gene3D FF domain 887 961 IPR036517 -
Chy07g00208 1107 Coils Coil 875 899 - -
Chy07g00208 1107 SUPERFAMILY FF domain 754 829 IPR036517 -
Chy07g00208 1107 SUPERFAMILY FF domain 679 748 IPR036517 -
Chy07g00208 1107 Pfam FF domain 554 603 IPR002713 -
Chy07g00208 1107 Pfam FF domain 763 818 IPR002713 -
Chy07g00208 1107 Pfam FF domain 689 738 IPR002713 -
Chy07g00208 1107 Pfam FF domain 621 671 IPR002713 -
Chy07g00208 1107 Pfam FF domain 898 945 IPR002713 -
Chy07g00208 1107 Gene3D - 344 389 - -
Chy07g00208 1107 CDD WW 348 375 IPR001202 GO:0005515
Chy07g00208 1107 SUPERFAMILY WW domain 306 340 IPR036020 GO:0005515
Chy07g00208 1107 MobiDBLite consensus disorder prediction 35 65 - -
Chy07g00208 1107 MobiDBLite consensus disorder prediction 1032 1054 - -
Chy07g00208 1107 Gene3D FF domain 551 607 IPR036517 -
Chy07g00208 1107 ProSiteProfiles FF domain profile. 619 674 IPR002713 -
Chy07g00208 1107 ProSitePatterns WW/rsp5/WWP domain signature. 307 332 IPR001202 GO:0005515
Chy07g00208 1107 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 127 1101 IPR039726 GO:0045292
Chy07g00208 1107 MobiDBLite consensus disorder prediction 1063 1079 - -
Chy07g00208 1107 SUPERFAMILY FF domain 611 681 IPR036517 -
Chy07g00208 1107 Coils Coil 668 697 - -
Chy07g00208 1107 Gene3D FF domain 751 834 IPR036517 -
Chy07g00208 1107 Gene3D FF domain 682 750 IPR036517 -
Chy07g00208 1107 Gene3D FF domain 608 681 IPR036517 -
Chy07g00208 1107 ProSiteProfiles FF domain profile. 687 741 IPR002713 -
Chy07g00208 1107 SUPERFAMILY WW domain 335 376 IPR036020 GO:0005515
Chy07g00208 1107 Coils Coil 813 840 - -
Chy07g00208 1107 Coils Coil 735 763 - -
Chy07g00208 1107 ProSiteProfiles WW/rsp5/WWP domain profile. 342 375 IPR001202 GO:0005515
Chy07g00208 1107 SMART FF_2 761 822 IPR002713 -
Chy07g00208 1107 SMART FF_2 552 606 IPR002713 -
Chy07g00208 1107 SMART FF_2 687 741 IPR002713 -
Chy07g00208 1107 SMART FF_2 619 674 IPR002713 -
Chy07g00208 1107 SMART FF_2 893 948 IPR002713 -
Chy07g00208 1107 Coils Coil 939 995 - -
Chy07g00208 1107 ProSiteProfiles FF domain profile. 883 948 IPR002713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00208 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1686.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00208 Chy-Chr7:1675951 Chy04g01168 Chy-Chr4:17904052 1.07E-06 dispersed
Chy01g02100 Chy-Chr1:25723734 Chy07g00208 Chy-Chr7:1675951 2.24E-35 transposed
Chy07g00208 Chy-Chr7:1675951 Chy07g01738 Chy-Chr7:21048790 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00208 Chy_Chr07 FPKM 11.942452 13.103643 3.730307 3.827558 7.55999 8.918912 6.972908 2.552619 2.141558 1.636114