Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00210 ATGGCACCTTGTGTTTTTGCTGAAAATCTCCTCATACCTAATTGGAAGTTGAACAAAAAAAAACTATACTTGATAAAATCTTTGGAGCCAACAAGGTTGAATATGAGTAATACTAGGATGGACAATAACAATGATCAGTGTAGGGGAAGAAAGATTTTTGTTGGTGGCTTATCGGCTGAATTAACCGAGGAGGAGTTCAGAAGTTACTTTGAAAATTTTGGTCAGATAACTGATGTAGTTGTGATGCATGATAGTGTAACCAATCGCCCTAGAGGATTTGGATTCGTCACATTTGAATCTTTAGAATCTGTTGACTCAGTTCTGCAAAGGAACTTTTATGAACTGAATGGGAGGCGTGTGGAGGTGAAGAGAGCTATCCCGAAAAAGGGCAACTTCAATGGTGTTCATATTCCCAATGCTAGAGCACAGGCAGCAAAAAGTCCACGGAATGTTCCTTTCCCTTACCCTTATTATAGTTCTGGTTATCCAATTTATCCTGGTTTTACACATTTTCCACCTTATGGAGCAGCAGTTGATTTGTATGGTTCTAGCTTCTATGGGAATTGGTTTCCCCCTGGTCCTGGTAACATAGCTTCAGATGGATGGTGGTGTGGACCTAATTTTTTTAGTGTTGGGATGTTACCTCCACTTTGTAGAAATTCTTTAATGCATCCAAGCAAGGGGATCTATATAGGGAGCAGAAATGGAATGGCTAATACCAGAAGAAACGGGGAGATAAAGCAGAACACGGCCGGAAAACGAATTATGTCGGCTGATGCAGCTCCATTTCAGATCAAAGACAGAACTTCTTGA 813 40.47 MAPCVFAENLLIPNWKLNKKKLYLIKSLEPTRLNMSNTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFGFVTFESLESVDSVLQRNFYELNGRRVEVKRAIPKKGNFNGVHIPNARAQAAKSPRNVPFPYPYYSSGYPIYPGFTHFPPYGAAVDLYGSSFYGNWFPPGPGNIASDGWWCGPNFFSVGMLPPLCRNSLMHPSKGIYIGSRNGMANTRRNGEIKQNTAGKRIMSADAAPFQIKDRTS* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1696029 1697190 + Chy7G130400.1 Chy07g00210 230221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00210 270 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 36 258 - -
Chy07g00210 270 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 36 258 - -
Chy07g00210 270 Gene3D - 47 133 IPR012677 -
Chy07g00210 270 SUPERFAMILY RNA-binding domain, RBD 42 133 IPR035979 GO:0003676
Chy07g00210 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 127 IPR000504 GO:0003723
Chy07g00210 270 SMART rrm1_1 51 123 IPR000504 GO:0003723
Chy07g00210 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 120 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00210 K14411 MSI; RNA-binding protein Musashi - csv:101211898 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00210 Chy-Chr7:1696029 Chy12g00591 Chy-Chr12:8383325 2.95E-15 dispersed
Chy07g00210 Chy-Chr7:1696029 Chy04g01108 Chy-Chr4:17159423 4.28E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00210 Chy_Chr07 FPKM 2.173057 2.148271 2.469629 3.666634 1.870766 2.369134 1.633916 5.388098 5.762884 7.069646