Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00212 ATGGGTGATCTCGAAAATGATGAAATGGGTTTTAGGAATTCGAATGATGGGTTAATGAATTGTCCATCTACAATGGCGATGGGTTCCTTTTTTGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAATTATGGAGCAGCTTCTTCAATGGTGTCCTCTCATGGCGAATTCTCTAATTCATTTCCTGTTGTTTTGGAGAATCATGGAGGGAGTGGGACAACACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGGATTCGAAGTTGCCATGTTTTGGGAGTGGGAATTTTTCAGAAATGTTTGGTTCTTTTGGTGTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGGAGGAACCACAAACACTACACAAACATCGCAAAAAAATTTACCTTTAGCTGGTGAAGAAAATTTACCATTATCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGGCCTTGATTCAACTTTCCCATTTAGCTCAAATAAGAAATCTGATATGAAATTGAAGAAGGATGTTTCTGGGGATAGTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAGCCAAATTTAGGTGGAAATTCACGTGGAAAATCAACTGGAAAACAAACTAAAGAGAAATCTAATAACAGTGCTGAAGCTCCTAAGGAAAATTATATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATAAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGTAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAAATTATCAACTATGTTCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTAGCTACTGTCAACCCGGACGTGAACGTTGATATTGAAAGGATTTTATCCAAAGATATTTTCAACATACGAGGCAGTAGTGGAAATGTTCTTGGATTTGATCCCGGGTTGAGCACCGTTTCTCCCGTCCCTCCTCACCGGATGTTTCAGTTTCAAGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTTCTCCTTTGCCTCAGACCATGTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCAGGTTCAACAATTGACAATTTGGGACCAAATGGGCGGTTGAAACCAGAGCGTTAA 1209 40.45 MGDLENDEMGFRNSNDGLMNCPSTMAMGSFFGSGWDPLVSLGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTDLEMDSKLPCFGSGNFSEMFGSFGVAGQILGGCSSNYRNGGTTNTTQTSQKNLPLAGEENLPLSVGSPNGKIRKRGLDSTFPFSSNKKSDMKLKKDVSGDSSSTQEEKNAEMEPNLGGNSRGKSTGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFNIRGSSGNVLGFDPGLSTVSPVPPHRMFQFQGTMSNMPTTSTQFSPLPQTMLESDLQSLLQMGFDSGSTIDNLGPNGRLKPER* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1716195 1718380 + Chy7G130420.1 Chy07g00212 230223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00212 402 MobiDBLite consensus disorder prediction 203 218 - -
Chy07g00212 402 MobiDBLite consensus disorder prediction 173 187 - -
Chy07g00212 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 303 IPR036638 GO:0046983
Chy07g00212 402 Gene3D - 235 308 IPR036638 GO:0046983
Chy07g00212 402 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 401 IPR024097 GO:0006355
Chy07g00212 402 MobiDBLite consensus disorder prediction 126 140 - -
Chy07g00212 402 CDD bHLH_AtBPE_like 228 313 - -
Chy07g00212 402 SMART finulus 244 294 IPR011598 GO:0046983
Chy07g00212 402 Pfam Helix-loop-helix DNA-binding domain 241 289 IPR011598 GO:0046983
Chy07g00212 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 288 IPR011598 GO:0046983
Chy07g00212 402 MobiDBLite consensus disorder prediction 126 246 - -
Chy07g00212 402 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01238 Chy-Chr5:16774374 Chy07g00212 Chy-Chr7:1716195 7.53E-23 dispersed
Chy07g00212 Chy-Chr7:1716195 Chy09g00423 Chy-Chr9:3739941 6.53E-53 dispersed
Chy11g00377 Chy-Chr11:3494250 Chy07g00212 Chy-Chr7:1716195 1.83E-42 dispersed
Chy01g01416 Chy-Chr1:19575646 Chy07g00212 Chy-Chr7:1716195 1.80E-48 transposed
Chy02g01884 Chy-Chr2:21655159 Chy07g00212 Chy-Chr7:1716195 7.76E-75 transposed
Chy02g02693 Chy-Chr2:29819597 Chy07g00212 Chy-Chr7:1716195 1.56E-38 transposed
Chy10g01083 Chy-Chr10:15909181 Chy07g00212 Chy-Chr7:1716195 1.61E-55 transposed
Chy03g01616 Chy-Chr3:18101152 Chy07g00212 Chy-Chr7:1716195 1.07E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18270 PF00010 HLH 4.20E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00212 - - csv:101203971 768.074