Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00214 ATGATGCTAGTTTCCGCCGACCGCAAGTATCGGCGGAGCCCTAAAAAGCTCTTACTCCCTGAGAAATACGACCACCAGGAGCCGGTTGAGGCAGGGTTAGATGGCGCATCGTTCTCCGGAGCCGTCTTTAACCTATCGAGCACCATTGTCGGCGCCGGAATCATGGCTCTTCCAGCTGTCGTGAAACAATTAGGTCTAATTCCCGGGTTGATCTTGATCATGCTCGTATCGACGTTGACAGAGTTGTCAATTGACTTCATCCTGAAATTCTCTCGGGCGTCCAAATCCGTTACGTACGCCGGTGCCGTCGGGGAATCTTTTGGCAGCGCCGGACGTACCCTCCTGCAGGTTTGCATCGTGGTCAATAATTTGGGTATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTGTCAGGATCATCGGCTAATAACATCCATCATAAGGGTGTAATGGAAGAATGGTTTGGTCAACATTGGTGGACAAGCCGTATATCCTTGATGCTGCTTACGACACTTTTCATTTTTGCGCCTCTAATATCCTTCAAGCGCGTAGATTCCTTGAGATACACATCAGCTTTGTCAGTTGCCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTAGCAATTGCGAAACTGATGGATGGAAGTATTGTAATGCCACGTCTGATGCCCAAAGTTGTTGATCAGGCATCATTTTGGCAACTTTTTACTACTGTTCCAGTTCTAGTCACTGCCTATATCTGTCACCATAATGTTCACCCTATTGAGAATGAGCTAAAAGATCCTTCACAGATGAAGTCAATAGTTCGAACATCTCTAACGATATGCTCGACGGTGTATATTGCGACAAGCTTTTTTGGATTTCTCCTGTTTGGAGACCAAACGTTGGATGATGTTCTTGCTAATTTTGATGGAGATCTTGGACTTCCATTCAGCTCATTGCTAGATGATGTTGTAAGAGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCCATTGTTTTTTTCTCCCTTCGCCTCAACGTTGATGGTCTACTCTTTCCCTATGCCATACCTATTACTTTCGACAACCGGCGGTTCTTCTTAATAACTATAGCTCTCATGAGTTTCATCTTTATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACAGCTGCCATCTCTGTTGGGTTCATATTCCCCGCTGCCCTCATCCTCAGGGACACTTGTGGAATTGCATCAAAGAAAGACAGACTGATAGCATGGATAATGTTCCTATTAGCTGTTTTCTCAAGTATCGTCGCAATCTCATGCGATATCTACAGTTCTTATGTGATGGAGAAACACACTTGA 1359 45.62 MMLVSADRKYRRSPKKLLLPEKYDHQEPVEAGLDGASFSGAVFNLSSTIVGAGIMALPAVVKQLGLIPGLILIMLVSTLTELSIDFILKFSRASKSVTYAGAVGESFGSAGRTLLQVCIVVNNLGMLVVYMIIIGDVLSGSSANNIHHKGVMEEWFGQHWWTSRISLMLLTTLFIFAPLISFKRVDSLRYTSALSVALAIVFVAITAGVAIAKLMDGSIVMPRLMPKVVDQASFWQLFTTVPVLVTAYICHHNVHPIENELKDPSQMKSIVRTSLTICSTVYIATSFFGFLLFGDQTLDDVLANFDGDLGLPFSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPITFDNRRFFLITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALILRDTCGIASKKDRLIAWIMFLLAVFSSIVAISCDIYSSYVMEKHT* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1732021 1735511 - Chy7G130440.1 Chy07g00214 230225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00214 452 Pfam Transmembrane amino acid transporter protein 36 436 IPR013057 -
Chy07g00214 452 PANTHER AMINO ACID TRANSPORTER 10 444 - -
Chy07g00214 452 PANTHER AMINO ACID TRANSPORTER AVT6A 10 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00214 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 862.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00770 Chy-Chr5:10830296 Chy07g00214 Chy-Chr7:1732021 0 dispersed
Chy07g00214 Chy-Chr7:1732021 Chy10g00342 Chy-Chr10:8625891 5.66E-135 dispersed
Chy07g00214 Chy-Chr7:1732021 Chy01g00591 Chy-Chr1:4223269 3.31E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01661 . 34 494 Amino Acid/Auxin Permease AAAP Family AT2G41190 62.7 1.5e-154 543.1
Chy04g01662 . 81 437 Amino Acid/Auxin Permease AAAP Family AT2G41190 57.8 3.0e-115 412.5
Chy05g00770 . 3 463 Amino Acid/Auxin Permease AAAP Family AT3G30390 67.5 2.8e-173 605.1
Chy07g00214 . 18 446 Amino Acid/Auxin Permease AAAP Family AT3G30390 60.4 6.0e-147 517.7
Chy04g01541 . 40 433 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.0 2.8e-132 468.8
Chy05g00770 . 21 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 66.4 1.2e-163 573.2
Chy07g00214 . 34 452 Amino Acid/Auxin Permease AAAP Family AT5G38820 60.1 2.8e-144 508.8
Chy01g01966 . 5 493 Amino Acid/Auxin Permease AAAP Family AT1G80510 70.6 4.2e-183 637.9
Chy10g01304 CCT,ECH 41 422 Amino Acid/Auxin Permease AAAP Family AT5G02180 51.0 4.0e-97 352.4
Chy10g01304 CCT,ECH 41 422 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.6 4.1e-91 332.4
Chy03g00938 CCT,ECH 1 432 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.2 1.5e-156 549.7
Chy10g01304 CCT,ECH 33 423 Amino Acid/Auxin Permease AAAP Family AT2G39130 68.5 3.0e-152 535.4
Chy04g01541 . 96 433 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.6 3.9e-111 398.3
Chy10g00342 . 10 432 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.2 1.3e-135 479.9
Chy10g00343 . 2 143 Amino Acid/Auxin Permease AAAP Family AT3G56200 65.5 1.8e-44 177.2
Chy03g00938 CCT,ECH 1 432 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.3 2.5e-144 509.2
Chy10g01304 CCT,ECH 28 423 Amino Acid/Auxin Permease AAAP Family AT3G54830 64.1 8.4e-140 494.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00214 Chy_Chr07 FPKM 19.443869 19.939369 12.011135 12.870635 17.011505 15.682794 15.833838 6.243304 6.625515 6.185701