Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00219 ATGGATACAGATTGCAATACGGGGCTTCTTCTTGGCCTAGGCAGGGTTTCCGGACACAATATTAATGCTTCTGTGCCCTCCGAACTACCCGGTGTTAATAAGAAGAAGCTGCAGCAGGTTTTGAAGTTCGATGATGATATTCTGCCTTCTTTGACTCTTGGGTTGTCGTTTGTTGTCGACACCGCGACGGAGGACGGCTGTTCGGGTAGTCCGGTTTCGTCGTTTTCGAACTCGTCGGGGTTTAAGAGGGAACGTGCTGGGGAAGAGGTGGTGGAGACGGAGGAGTGTATGAAAGTGGGTGAGGAAGATGAAGAGGGAAGTCCGAGGAAGAAACTTAGATTAACAAAAAAACAATCCGCCATTTTGGAGGACAATTTCAAAGAACACTCGAGTCTTAGTCCTAAGCAAAAGCAGGATTTGGCTAGGCAATTAAACCTAAGGCCAAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGAACCAAGCTGAAGCAAACAGAAATGGATTGTGAATTACTGAAGAAATGCTGTGAAAAGCTAAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAACTTAAATCACTCAAACTAACGCCTCCACCGTTCTGCATGCAACTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCCATCTGCGGCGGCAGCAGCAGCGGCGGTGATGCATCTCCGGCCAATAACTTCTCAATTGGGTCAAAGCCTCAATTTCTCAAATTCCCATTTAACCATCCATCGGCGGCTTGTAATTAG 786 46.69 MDTDCNTGLLLGLGRVSGHNINASVPSELPGVNKKKLQQVLKFDDDILPSLTLGLSFVVDTATEDGCSGSPVSSFSNSSGFKRERAGEEVVETEECMKVGEEDEEGSPRKKLRLTKKQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCESSICGGSSSGGDASPANNFSIGSKPQFLKFPFNHPSAACN* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1789671 1791258 + Chy7G130490.1 Chy07g00219 230230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00219 261 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 6 260 - -
Chy07g00219 261 Gene3D - 100 170 - -
Chy07g00219 261 SUPERFAMILY Homeodomain-like 107 173 IPR009057 -
Chy07g00219 261 SMART HOX_1 107 169 IPR001356 GO:0003677
Chy07g00219 261 Pfam Homeobox associated leucine zipper 165 198 IPR003106 GO:0006355|GO:0043565
Chy07g00219 261 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Chy07g00219 261 Pfam Homeodomain 109 163 IPR001356 GO:0003677
Chy07g00219 261 SMART halz 165 208 IPR003106 GO:0006355|GO:0043565
Chy07g00219 261 CDD homeodomain 108 166 IPR001356 GO:0003677
Chy07g00219 261 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Chy07g00219 261 Coils Coil 164 201 - -
Chy07g00219 261 PANTHER - 6 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01579 Chy-Chr6:17890031 Chy07g00219 Chy-Chr7:1789671 2.53E-59 dispersed
Chy06g02070 Chy-Chr6:24888308 Chy07g00219 Chy-Chr7:1789671 1.44E-36 dispersed
Chy07g00219 Chy-Chr7:1789671 Chy09g00874 Chy-Chr9:11486462 3.77E-40 dispersed
Chy02g00808 Chy-Chr2:5048828 Chy07g00219 Chy-Chr7:1789671 2.27E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18272 PF00046 Homeodomain 4.80E-17 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00219 K09338 - csv:101212868 454.136