Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00220 ATGGAGGAATATAATAATGATGTAAATGAAAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAAGTAATTTCGGGAGATCAACGGCTGAGATGAATGTTAATAATTTTCATCTTCAACAAGGAACCGACTGTTTTCAATCACCTCATCATCAATCGATTGTCAAGACTGAAGCTACTACTTCACAACATCACCACCTTCTCAAATTTCATTACCCTTTAATCCGACAACAACCACCACCACCTCCACCACCTCAACCGCAAACGTCATGTCGTCCCGAACAAAACGGTGTCGTTGATTTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGCGGCGGCCCGTCAAGAATTTGAAGCACGACAGCGATCTTCCATGGTTTCTGGAGAGACCAATAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTATGATATGTTGGTGAAATATCGGGAAGAACTTTCAAGGCCGATTCAAGAAGCTATGGATTTTATGCGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCTGATGAGAAGTGTGATGGTATGGGATCGTCTGAGGAGGAGCAAGAAAATAGTGGTGGAGAAACCGAACTACCAGAGATCGATCCACGAGCTGAAGATAGAGAATTGAAGAACCACCTCCTGAGGAAGTACAGTGGTTACTTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAGGGAAAACTCCCAAAAGAAGCAAGGCAAAAACTCCTTAATTGGTGGGAGTTACATTACAAATGGCCTTACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAATCCACTGGGTTGGATCAAAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCACTCTACATCGACAGTCACTACATGACCGATGGCCATTATCGGCTTGGACCGTGA 1110 44.14 MEEYNNDVNENSNGRGNFLYGSGNSSSSNFGRSTAEMNVNNFHLQQGTDCFQSPHHQSIVKTEATTSQHHHLLKFHYPLIRQQPPPPPPPQPQTSCRPEQNGVVDFEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLAAARQEFEARQRSSMVSGETNKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCDGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDSHYMTDGHYRLGP* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1794759 1798423 - Chy7G130500.1 Chy07g00220 230231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00220 369 Gene3D - 276 338 - -
Chy07g00220 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 361 - -
Chy07g00220 369 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Chy07g00220 369 MobiDBLite consensus disorder prediction 1 20 - -
Chy07g00220 369 MobiDBLite consensus disorder prediction 79 99 - -
Chy07g00220 369 Pfam KNOX2 domain 162 208 IPR005541 GO:0003677|GO:0005634
Chy07g00220 369 SMART ELK_2 167 187 IPR005539 GO:0003677
Chy07g00220 369 SMART ELK_2 251 272 IPR005539 GO:0003677
Chy07g00220 369 Pfam KNOX1 domain 108 150 IPR005540 GO:0003677|GO:0005634
Chy07g00220 369 CDD homeodomain 283 335 IPR001356 GO:0003677
Chy07g00220 369 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Chy07g00220 369 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 361 - -
Chy07g00220 369 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Chy07g00220 369 MobiDBLite consensus disorder prediction 218 246 - -
Chy07g00220 369 SMART KNOX2_2 158 209 IPR005541 GO:0003677|GO:0005634
Chy07g00220 369 SUPERFAMILY Homeodomain-like 272 347 IPR009057 -
Chy07g00220 369 Pfam ELK domain 251 272 IPR005539 GO:0003677
Chy07g00220 369 MobiDBLite consensus disorder prediction 80 95 - -
Chy07g00220 369 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Chy07g00220 369 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Chy07g00220 369 SMART HOX_1 273 338 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00454 Chy-Chr1:3263812 Chy07g00220 Chy-Chr7:1794759 1.06E-80 dispersed
Chy02g00425 Chy-Chr2:2674152 Chy07g00220 Chy-Chr7:1794759 1.49E-78 dispersed
Chy03g01721 Chy-Chr3:18711428 Chy07g00220 Chy-Chr7:1794759 1.43E-74 dispersed
Chy05g01035 Chy-Chr5:14963722 Chy07g00220 Chy-Chr7:1794759 7.02E-73 dispersed
Chy07g00220 Chy-Chr7:1794759 Chy10g00887 Chy-Chr10:14651229 3.90E-19 dispersed
Chy03g01625 Chy-Chr3:18173550 Chy07g00220 Chy-Chr7:1794759 4.58E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18273 PF03791 KNOX2 3.20E-25 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00220 - - csv:101213104 687.952