Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy07g00223 | ATGATGATCGGAGAACGATCTAGATTCAACCACACCATTCAAGTTCCTCCTTGGGACCCACTTGATGACCATCATATGACCGGAATTTCCTCCCCGGTTTTCATTTCCAGTGGGGTCGATTCATTCATCGACTCTTTTTCCTCCATTCACCGTTACCTACCCTCTGCGGCGGATTCTGATGAATTGGATGGGGTGGGAGAGGCGGTCGACGGTTTTTCCTGTGACCATTTCCGGATGTTTGAGTTCAAAATCCGGAGATGTGCACGTGGGAGGTCGCACGATTGGACAGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGGCGTGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCGGAGTTTCGAAAAGGTAATTGTAAGAAAGGGGATTCTTGTGATTTCGCTCATGGGATATTCGAGTGTTGGCTTCATCCTGCTCGGTACCGTACTCAGCCGTGTAAGGATGGGTTAGCTTGTCGCCGTCGTGTTTGTTTTTTTGCACACACGCCGGAACAGCTTCGGGTTCTGCCGCAGCAGAGTCCGAGAACCCCTGTTTCGGCTGATTCCGTTGATGGGTCATCGCGAATTGCACATGCATTCGATTCATATTTTAGTAAAGGGTCATTTGTGACTTCACCCACTTCAATTCTATCAACGCCGCCTGTATCTCCGCCTTCTGACTCACCTCCCTTATCCCCGAATTGTCCGTTTAATTCAGTGAATGGATTGGTCTCGTGTATGCGCAATCTTCAACTTGGGAAATTAAAAGCAATCCCTCAGTGGGGAAGGATTCAATTGGGACAAAACCCTCTGTCGCCCTCCAGCTCTGGTTTGTACAACTTACCGTCAACTCCAACGAACGGAAATTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCTCCAATGGAGAGGGTGGAATCTGGGAGAGACTTAAGAGCTCAAATGTATGCGAAACTGAGCAAAGACAACTCTGTGAAGGAGATGGATTCGATATTGACACCCGATGTGGGATGGGTTTCTGAGCTACTAATGTGA | 1050 | 49.14 | MMIGERSRFNHTIQVPPWDPLDDHHMTGISSPVFISSGVDSFIDSFSSIHRYLPSAADSDELDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRIAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSVNGLVSCMRNLQLGKLKAIPQWGRIQLGQNPLSPSSSGLYNLPSTPTNGNYELWGKNYEEEPPMERVESGRDLRAQMYAKLSKDNSVKEMDSILTPDVGWVSELLM* | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1831517 | 1832566 | + | Chy7G130530.1 | Chy07g00223 | 230234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy07g00223 | 349 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 348 | - | - | |
| Chy07g00223 | 349 | Gene3D | - | 113 | 185 | - | - | |
| Chy07g00223 | 349 | SMART | c3hfinal6 | 116 | 142 | IPR000571 | GO:0046872 | |
| Chy07g00223 | 349 | SMART | c3hfinal6 | 151 | 174 | IPR000571 | GO:0046872 | |
| Chy07g00223 | 349 | ProSiteProfiles | Zinc finger C3H1-type profile. | 117 | 143 | IPR000571 | GO:0046872 | |
| Chy07g00223 | 349 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 348 | IPR045234 | - | |
| Chy07g00223 | 349 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 121 | 141 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g00319 | Chy-Chr1:2293137 | Chy07g00223 | Chy-Chr7:1831517 | 7.50E-65 | dispersed | |
| Chy05g01423 | Chy-Chr5:18195541 | Chy07g00223 | Chy-Chr7:1831517 | 1.93E-105 | dispersed | |
| Chy07g00223 | Chy-Chr7:1831517 | Chy11g01356 | Chy-Chr11:19834103 | 6.93E-55 | dispersed | |
| Chy07g01371 | Chy-Chr7:18326465 | Chy07g00223 | Chy-Chr7:1831517 | 6.10E-53 | transposed | |
| Chy02g01185 | Chy-Chr2:8505957 | Chy07g00223 | Chy-Chr7:1831517 | 3.17E-111 | wgd | |
| Chy03g01626 | Chy-Chr3:18186541 | Chy07g00223 | Chy-Chr7:1831517 | 2.51E-87 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18274 | PF00642 | zf-CCCH | 6.00E-05 | CL0537 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy07g00223 | - | - | csv:101205433 | 712.99 |