Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00247 ATGACAAGAACTGAAATTTCCACTACTACCCCTATGTATTCTCATCAATCATCTTCTTCCATAAATCAACCAACACCACCGCTGCCACCGCCACCGCCACCGTCAAAAAAGAAGCGAAATCTTCCAGGCAATCCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACCAATAGATTCATATGCGAGATCTGTAAAAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTATGTGTGCCCAGAACTGACATGTGTACATCATCACCCGTCGAGGGCTCTCGGCGATCTAACCGGGATTAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAGTAACCCAACTCCTAAAATTACATCCCACCTTTTCCCATCTATCAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCCTCCTCCACCTTCTCATCAAAACCCTAATAACCCTACTTCTTCAATCGGGTTCGGATTACCCGGTCTCGGTCCGGGTCATCTTTTTGCGTCTTCTTGCCCTGCATGGGAAGTTAACAACAACGGCAATAATAATTCATGTTCAACTGAAATTGCTCCATTTTTTCATCACATGGTGGGTTTTGAAGAGGCGGCCTCATTTGAAGAAGCACTTAATGGGATATTGATGAGTAACAGTAATAGAGGTAATAAAAATGGTGGCAAAGGTGGCGGTGCTGCCGGAGAAATAACGAGGGATTTTCTGGGGGGGCTGAGACCGGTGGATTCTTCTATGTTTCAGAATCATGATCATCAGATGATAAATAACGACATGTCGAATTTGGATTCTCCTTCTCCTTCTCCTTCGACGTTTGGAGTGCACGGCCAGATTCAGAATACGACATGTTGGCGTCAAAATTAG 1152 43.75 MTRTEISTTTPMYSHQSSSSINQPTPPLPPPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNSNPTPKITSHLFPSINFPLKFEHQDPFFPPPPPPPSHQNPNNPTSSIGFGLPGLGPGHLFASSCPAWEVNNNGNNNSCSTEIAPFFHHMVGFEEAASFEEALNGILMSNSNRGNKNGGKGGGAAGEITRDFLGGLRPVDSSMFQNHDHQMINNDMSNLDSPSPSPSTFGVHGQIQNTTCWRQN* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1959247 1961040 - Chy7G130770.1 Chy07g00247 230258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00247 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Chy07g00247 383 MobiDBLite consensus disorder prediction 1 48 - -
Chy07g00247 383 Gene3D Classic Zinc Finger 61 88 - -
Chy07g00247 383 Gene3D Classic Zinc Finger 98 189 - -
Chy07g00247 383 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Chy07g00247 383 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 207 - -
Chy07g00247 383 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 17 207 - -
Chy07g00247 383 MobiDBLite consensus disorder prediction 1 22 - -
Chy07g00247 383 MobiDBLite consensus disorder prediction 224 240 - -
Chy07g00247 383 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Chy07g00247 383 SMART c2h2final6 141 161 IPR013087 -
Chy07g00247 383 SMART c2h2final6 65 87 IPR013087 -
Chy07g00247 383 MobiDBLite consensus disorder prediction 223 248 - -
Chy07g00247 383 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00247 Chy-Chr7:1959247 Chy11g00664 Chy-Chr11:8175368 1.70E-111 dispersed
Chy08g01019 Chy-Chr8:17381947 Chy07g00247 Chy-Chr7:1959247 2.33E-96 dispersed
Chy01g02200 Chy-Chr1:26516668 Chy07g00247 Chy-Chr7:1959247 2.30E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18276 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00247 K25870 - csv:101215280 690.263