Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00252 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATTGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGTCCATCAGGGGACTTGAGCACTGCTTGGAAGGGTTATAAAGGTGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTGCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTAGTGAGGGGTCGTTTGGTGCGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGCGTCAGAGCACGTCGTGTGAGGATGTCAGTTGAGGGGCAGGCCGTACAACAATTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGTTATCATAATACAAGGAGAATGCGCTATTCTGATTTGTGTGTTCAAAGATGGCTTTGAGAATAACAATTTGGTTCATTTGCAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAATACCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGAGCTGTATAGAATCTGTCGTGTCTAAACATTCCAAAGGTTTTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACAAGGATTTCTGCTAAACCTCCTTCAAATGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCAGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCAAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAAAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAATCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCGGATTCATCAGTCAATCCCTTTAAGCCATTGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGAACTCTTGGCCAAAGCTTATCTTATCGGGATGGAATAGACGTGCAGTACAATAATGTCAAAATGATCTTATCTGAGCCTGATTCGTTTGCAAAGATGCTTGCATTTTCAATGGATGAAGTATGA 1539 44.57 MGGSGKWMKVFIGQRKSDKEDKEKLGSTKTKKWKLWRSPSGDLSTAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEVIIIQGECAILICVFKDGFENNNLVHLQEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKAIPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKSCIESVVSKHSKGFEPGLVKVRKNNVSTRISAKPPSNGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRSDKNGTKLRTLGQSLSYRDGIDVQYNNVKMILSEPDSFAKMLAFSMDEV* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1986651 1988845 - Chy7G130820.1 Chy07g00252 230263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00252 512 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Chy07g00252 512 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Chy07g00252 512 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 171 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 374 398 - -
Chy07g00252 512 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Chy07g00252 512 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 203 468 - -
Chy07g00252 512 PANTHER IQ-DOMAIN 5-RELATED 203 468 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 438 457 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 438 470 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 1 31 - -
Chy07g00252 512 PANTHER IQ-DOMAIN 5-RELATED 1 171 - -
Chy07g00252 512 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Chy07g00252 512 MobiDBLite consensus disorder prediction 12 30 - -
Chy07g00252 512 SMART iq_5 112 133 IPR000048 GO:0005515
Chy07g00252 512 SMART iq_5 89 111 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00252 - - - csv:101210019 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00252 Chy-Chr7:1986651 Chy10g01339 Chy-Chr10:17688916 3.42E-37 dispersed
Chy02g01601 Chy-Chr2:14770292 Chy07g00252 Chy-Chr7:1986651 4.70E-42 transposed
Chy02g01602 Chy-Chr2:14776512 Chy07g00252 Chy-Chr7:1986651 3.90E-06 transposed
Chy01g02196 Chy-Chr1:26490683 Chy07g00252 Chy-Chr7:1986651 1.27E-78 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g00721 . 1 499 IQD Protein Family AT3G52290 51.7 2.2e-98 356.3
Chy02g01601 . 1 295 IQD Protein Family AT3G22190 62.5 6.6e-76 281.6
Chy07g00252 . 1 466 IQD Protein Family AT2G26180 56.8 1.5e-112 403.3
Chy02g00253 . 1 274 IQD Protein Family AT2G33990 52.9 4.0e-63 238.4
Chy07g00958 . 65 240 IQD Protein Family AT2G33990 54.7 1.3e-48 190.3
Chy02g00253 . 1 232 IQD Protein Family AT3G15050 50.9 4.7e-56 214.9
Chy07g00958 . 68 241 IQD Protein Family AT3G15050 61.6 9.8e-54 207.2
Chy11g01727 . 1 513 IQD Protein Family AT4G00820 50.4 6.4e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00252 Chy_Chr07 FPKM 5.584309 2.291027 3.403766 0.0 7.017831 5.125037 5.045463 2.510111 3.781736 3.695548