Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00252 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATTGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGTCCATCAGGGGACTTGAGCACTGCTTGGAAGGGTTATAAAGGTGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTGCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTAGTGAGGGGTCGTTTGGTGCGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGCGTCAGAGCACGTCGTGTGAGGATGTCAGTTGAGGGGCAGGCCGTACAACAATTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGTTATCATAATACAAGGAGAATGCGCTATTCTGATTTGTGTGTTCAAAGATGGCTTTGAGAATAACAATTTGGTTCATTTGCAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAATACCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGAGCTGTATAGAATCTGTCGTGTCTAAACATTCCAAAGGTTTTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACAAGGATTTCTGCTAAACCTCCTTCAAATGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCAGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCAAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAAAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAATCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCGGATTCATCAGTCAATCCCTTTAAGCCATTGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGAACTCTTGGCCAAAGCTTATCTTATCGGGATGGAATAGACGTGCAGTACAATAATGTCAAAATGATCTTATCTGAGCCTGATTCGTTTGCAAAGATGCTTGCATTTTCAATGGATGAAGTATGA 1539 44.57 MGGSGKWMKVFIGQRKSDKEDKEKLGSTKTKKWKLWRSPSGDLSTAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEVIIIQGECAILICVFKDGFENNNLVHLQEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKAIPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKSCIESVVSKHSKGFEPGLVKVRKNNVSTRISAKPPSNGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRSDKNGTKLRTLGQSLSYRDGIDVQYNNVKMILSEPDSFAKMLAFSMDEV* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1986651 1988845 - Chy7G130820.1 Chy07g00252 230263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00252 512 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Chy07g00252 512 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Chy07g00252 512 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 171 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 374 398 - -
Chy07g00252 512 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Chy07g00252 512 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 203 468 - -
Chy07g00252 512 PANTHER IQ-DOMAIN 5-RELATED 203 468 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 438 457 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 438 470 - -
Chy07g00252 512 MobiDBLite consensus disorder prediction 1 31 - -
Chy07g00252 512 PANTHER IQ-DOMAIN 5-RELATED 1 171 - -
Chy07g00252 512 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Chy07g00252 512 MobiDBLite consensus disorder prediction 12 30 - -
Chy07g00252 512 SMART iq_5 112 133 IPR000048 GO:0005515
Chy07g00252 512 SMART iq_5 89 111 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00252 Chy-Chr7:1986651 Chy10g01339 Chy-Chr10:17688916 3.42E-37 dispersed
Chy02g01601 Chy-Chr2:14770292 Chy07g00252 Chy-Chr7:1986651 4.70E-42 transposed
Chy02g01602 Chy-Chr2:14776512 Chy07g00252 Chy-Chr7:1986651 3.90E-06 transposed
Chy01g02196 Chy-Chr1:26490683 Chy07g00252 Chy-Chr7:1986651 1.27E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00252 - - csv:101210019 830.861