Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00275 ATGGATGTGAACGGAAATAAAGGTATTCGAAGAGGTTCGTCTCAGAAGGAGAGTGGAAATGGAGGTGAAGTTGTGGTTCAGCTTAGCGGCGTTGAAAATGAGTGCTCTGTTCCGAAGCAAAACAGAGCCGATTCACAAATCAAAGAGCCGACCGGTTCAAGTGTTGGCTATGGCAACGCTTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCAATTTCAAATGGAACCCTCACGCCCAGAAGGTCTCTGAGAAGATCAACTCTTTCCAAACCCAAATCCAGATTTGGGGAACAGCCATGTTTTATCGATTCAGACATGCTTGAGGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTTAAATCTCAACACGCCGAAGGCCCAACCTGAGGGAGAAGATGATGGGAATATGGGGTCGAATGGAAAGCACAAGAAGGTGAAGGTGAAGACAGTGATTAAGTGGATTGGAGTTTTTTGCATAATTAGTTGCTTGGTGGCTAGCTTGACTGTCAACCCTTTGAAGAATCGCTTTCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGATTGATATTTACTCGTTGGGTTATGAATGTGGTTGTCTTTTTGATAGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTTACCCTTTGGTTGTCATTGGTTCTTGCTACATGGGGGTCCTTGTTTGATCGAAGAAACCATATGATTTCTAGTTCGAGGATCACTGCTAGGATTTTGGATGCTGTTACATGGACTTTGGCAAGCCTTCTTATAGGGGCATTCTTGTGGTTGATTAAAACATTGTTGCTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCTCTTTTCCTTCATCACGTTCTACAAACCCTCTTGAGGCCTCCTCTAGTGGAAGATGAAAGTACTGCCAAGTTCAAGTGTTGTCGATTTTGTTTTGAGAGTAAAAAACCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACGAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAAATGTCGATCTCACAAATACTTGATGATGAAAGCTACAGAGATGTCGCCGATGGTGATATCACAAATGAGATGAAAGTTGCCAAAGAAGCTGCTAAAGAGATCTTCAAAAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAAGGGATCTTCTGGAATTCATGATTCCAGAAGAAGTTAACCTTGTGTGGCCACACTTTGAGGTAGATAAGACAAGGAAGATTGACATGAAAGCTCTAACAAATTGGGTGGGGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCTTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAACAATTTAATAACAGCGCTTATTATAGTAGTAACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTCGGGGACCGATGTGTTGTCGATGGTGTCCAGCTGTTGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAGCTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCATCGAATTCTCAATCGGTTTCGAAACACCAGTGGAGAGGATTGGGGCCATGAAAGAACAAATAAAGAGGTATTTGGAGGAGAATCCCCAACACTGGTATCCAAATCATAATGTGGTGGTGAAGGAGATCGAAAACGTAAATAAGATCAAGATTGCTCTTTATACAAACCACACCATGAATTTTCAAGACTGGGCTGAGAAGAACCGAAGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACTGTTCATCTCTTCCCAGTTGAGGGGCACTGA 2166 42.01 MDVNGNKGIRRGSSQKESGNGGEVVVQLSGVENECSVPKQNRADSQIKEPTGSSVGYGNASPLAPTANKPPKIPISNGTLTPRRSLRRSTLSKPKSRFGEQPCFIDSDMLEEENHVSLREQIGATSSRSLNLNTPKAQPEGEDDGNMGSNGKHKKVKVKTVIKWIGVFCIISCLVASLTVNPLKNRFLWGLKVWKWCLLATVILCGLIFTRWVMNVVVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLSLVLATWGSLFDRRNHMISSSRITARILDAVTWTLASLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESLFLHHVLQTLLRPPLVEDESTAKFKCCRFCFESKKPDRKKVIDMGKIHELKREKVSAWTMKVLVDAVTSSEMSISQILDDESYRDVADGDITNEMKVAKEAAKEIFKNVALPGNKFIEERDLLEFMIPEEVNLVWPHFEVDKTRKIDMKALTNWVGKVYQGRKTLAHALKDTKTAVKQLNNLITALIIVVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTIEFSIGFETPVERIGAMKEQIKRYLEENPQHWYPNHNVVVKEIENVNKIKIALYTNHTMNFQDWAEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGH* 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2150206 2152965 + Chy7G131050.1 Chy07g00275 230286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00275 721 Pfam Mechanosensitive ion channel 499 705 IPR006685 GO:0016020|GO:0055085
Chy07g00275 721 MobiDBLite consensus disorder prediction 72 87 - -
Chy07g00275 721 MobiDBLite consensus disorder prediction 1 100 - -
Chy07g00275 721 MobiDBLite consensus disorder prediction 129 151 - -
Chy07g00275 721 Gene3D - 559 608 IPR023408 -
Chy07g00275 721 SUPERFAMILY Sm-like ribonucleoproteins 548 608 IPR010920 -
Chy07g00275 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 22 715 - -
Chy07g00275 721 MobiDBLite consensus disorder prediction 8 22 - -
Chy07g00275 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 22 715 IPR016688 -
Chy07g00275 721 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01258 Chy-Chr2:9193429 Chy07g00275 Chy-Chr7:2150206 0 dispersed
Chy07g00275 Chy-Chr7:2150206 Chy11g01095 Chy-Chr11:15977556 5.46E-153 dispersed
Chy07g00274 Chy-Chr7:2141528 Chy07g00275 Chy-Chr7:2150206 0 tandem
Chy07g00275 Chy-Chr7:2150206 Chy07g00276 Chy-Chr7:2155922 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00275 K22048 - csv:101217197 1363.98