Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00297 ATGGATGTGGAGGAATCAGTGAGATTAAGATTGGAGATATTGTATGGACAATTGGGGAAGAAACACACATTCGAGGAAGGAGTTTCTAACATCACTACTCTGCTTCAAGATCGTTATCCTGATGCTTCTCCTGATTTACGCAAATCGTTCTATTACATAATTTGCCGAGTTGCAACATTGTTGAGGTCACGATTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTCAAGCTTTTTCAGTTTTCTTTGACTCTGCTCTCTGATCAATCTGAGATAAAACACCTTCAGGCTTGCGTAGCTCAGGCCGAGGAAATTCTACACGCCATCGACAATCCACCTCCGCAGTCACAAAGTACTTCATCAAATACAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCGCAGTGGCTGGTGCAATCAAATCTCGTGACAGCCGCTGCAGCTGCGCTATCTAATGTTGAATCTTCTCAACCTTCGGCTGAGAACAACAACGTTTCTGAGTCAGTTGCTGGCATTCTTCTAGCTCTTAATGGAGATCTTGAAACTGTTATAAATGCGTTAACTGTTGACACGGTTGACCAACCACCGAAAGCCCCTCCTGCAAGTAAAGAAGTCGTCGCCAACCTTCCTGTAACTACTATAACAGATGAAATTCTTGCCAAGCTAGGAAAAGATGTACAATGTGCCATTTGCAAGGAAAACTTCGTTGTTGATGATAAGAAGCAAGAATTGCCTTGCAAACATGCATTCCACCAAGATTGTTTGAAGCCATGGCTGGACTCCAATAACTCTTGTCCAATCTGTCGACACGAATTGCCTACCGACGACCAAGAATACGAAAACTGGAAGGAACGAGAGAGAGAAGCCGAAGAAGCAAGACGAGGAGCTGAAAATGCTGTTCGTGGTGGTGAATATATATTAGGGCTTTTAAGAAAGATTGGGGCTGTTGCAGGTAATGTTCTCTTTTTGCAGAAAAACTTAAATTTGGGTCCAGATGCAACTGAAGTATCAGAAGAAAAATTGTTATCTCTAGTTACTGAATGGTTGATTGATTCGAATCTTAATGTCGATAATAAAGATGCTGGTTTTGTTGAGAATCCACAGCAGAACATTTCTGATGCCATTGATCTGCTGTCACGTCTAGCAACAAGGATCGATGTTAATAATAATAAGTTTAGGAGAATTGATGATTTTGAATTCACTCCAGAATGTGCGTTTTTTGATTTGCCGGACATTCCTCTATACCATGATTGGATAGTTGATTCGCAGTGTGCTCATGTAATGGCCATGGCTGTTCAGAAGTTCTTTCCCGATGCTAAAGTGACAATTGGACCATGGATTGAAAATGGGTTTTACTATGATTTTGATATGGAGCCCTTGGGAGATAAAGATTTGATGAAAATCAAGAAGGAGATGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCCAAGCGTTGGATACCAAGGTTTTCTCCTTATTTATGTTTGCTTTGTCTTTGAAAAGAGTTGGTGCAAGCACAATTGTGAATTCACTAGAGGACCTGTAA 1584 41.73 MDVEESVRLRLEILYGQLGKKHTFEEGVSNITTLLQDRYPDASPDLRKSFYYIICRVATLLRSRFTAPGFWLSGLKLFQFSLTLLSDQSEIKHLQACVAQAEEILHAIDNPPPQSQSTSSNTGYLFEGHLTVDPEPPQPQWLVQSNLVTAAAAALSNVESSQPSAENNNVSESVAGILLALNGDLETVINALTVDTVDQPPKAPPASKEVVANLPVTTITDEILAKLGKDVQCAICKENFVVDDKKQELPCKHAFHQDCLKPWLDSNNSCPICRHELPTDDQEYENWKEREREAEEARRGAENAVRGGEYILGLLRKIGAVAGNVLFLQKNLNLGPDATEVSEEKLLSLVTEWLIDSNLNVDNKDAGFVENPQQNISDAIDLLSRLATRIDVNNNKFRRIDDFEFTPECAFFDLPDIPLYHDWIVDSQCAHVMAMAVQKFFPDAKVTIGPWIENGFYYDFDMEPLGDKDLMKIKKEMGFHQLLQGVAEVSDVENFQALDTKVFSLFMFALSLKRVGASTIVNSLEDL* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2401261 2416261 - Chy7G131270.1 Chy07g00297 230308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00297 527 SUPERFAMILY RING/U-box 227 280 - -
Chy07g00297 527 Pfam Ring finger domain 232 274 IPR001841 -
Chy07g00297 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 307 - -
Chy07g00297 527 Gene3D - 423 506 - -
Chy07g00297 527 Pfam MINDY deubiquitinase 324 433 IPR033979 GO:0004843|GO:1990380
Chy07g00297 527 SMART ring_2 233 273 IPR001841 -
Chy07g00297 527 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Chy07g00297 527 SUPERFAMILY ThrRS/AlaRS common domain 429 477 IPR018163 GO:0000166
Chy07g00297 527 PANTHER ABI3-INTERACTING PROTEIN 2-1 6 307 - -
Chy07g00297 527 Coils Coil 284 304 - -
Chy07g00297 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 280 IPR013083 -
Chy07g00297 527 CDD RING-H2_RNF126_like 232 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00119 Chy-Chr1:770251 Chy07g00297 Chy-Chr7:2401261 8.63E-12 dispersed
Chy01g00504 Chy-Chr1:3647161 Chy07g00297 Chy-Chr7:2401261 1.83E-24 dispersed
Chy05g01396 Chy-Chr5:18029602 Chy07g00297 Chy-Chr7:2401261 8.87E-16 dispersed
Chy07g00297 Chy-Chr7:2401261 Chy09g01174 Chy-Chr9:13933841 8.03E-42 dispersed
Chy12g00904 Chy-Chr12:14432331 Chy07g00297 Chy-Chr7:2401261 2.43E-08 dispersed
Chy07g00297 Chy-Chr7:2401261 Chy04g02163 Chy-Chr4:26740824 3.53E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00297 K16274 - csv:101218065 584.334