Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00300 ATGGTCTGCGAGATGGAGAATGGTGTTATTGAAGATATGGACATTGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGTTCTTCACAACTACAATACCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCAGTGCGCCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCTATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCTTTCAAAGCAAGAGAGTCGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCTGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCTGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTCAGTGGTGCTGGCGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTCGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTCCGTGAGGAGATTGCAGTGCAAAAGGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCATTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGATCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACACGTTCTACAGACTGCCGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATTGGAGATGTTCTTAGGATACGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCACAAGAAATCAACGGCTGATAACTCAACAGTTACAATAAACTCTTTGCAAGATGGAACATGTCTTCTACCCTCTCAGAATGGCTTGTGTGGCCAAAAACACAGCGACAGAAATCATTTGGATTGTGATGGACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCGTGTTCTTCCGAAACGACAGTATGGATACGCTGTGATGTGTATGACACAGGAATTGGAATACCGGAAAATGCGCTACCAACCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGTTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCGAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCTTACAAGGTTTCAAGCACCTGCAGTCCTTCGGACGATTCAGACGAGATCTCGGATGACGAATCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCATAGTTTCAGTACGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTAACTGAAGGTGTTCCTTATCCTATTTCCTCAAACAACATCGATACCCGTTACGCCAATGCTGATGTTGTAACCTCAAGCAAATCACAATGTTCATCAAGTCATGTAAACCCAAATCTTGATAACCAAAACCAACCAGATACAAATGCTCGGTTGCAAAATGTCGGGGATGTGAATTCCCTGCCCAAATCAGAAACAACAAAGTTTGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAAGGGAAAGAGAGATCCGAGGCAAGTAATCACTGCAGAAATAGCAGTAGTGGTCCTGAAGTAACGTTGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAACAAGACCAATATTATGGTGACGCAGTCCATGATGAAGAAGTTCGGCCAAAAAATTGACGTTGTAACTAATGGCATTGAAGCTGTTCGAGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCACATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCGTTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA 3003 41.72 MVCEMENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVTINSLQDGTCLLPSQNGLCGQKHSDRNHLDCDGPGTPSKSETTMNGNRENKSCSSETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSSTCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLLHTTGYPTSTKLNGLTEGVPYPISSNNIDTRYANADVVTSSKSQCSSSHVNPNLDNQNQPDTNARLQNVGDVNSLPKSETTKFEDRLEKQSNKLQKTDQGKERSEASNHCRNSSSGPEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTPSSSTSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2468997 2476995 + Chy7G131300.1 Chy07g00300 230311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00300 1000 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Chy07g00300 1000 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Chy07g00300 1000 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Chy07g00300 1000 ProSiteProfiles Response regulatory domain profile. 849 995 IPR001789 GO:0000160
Chy07g00300 1000 Gene3D - 336 434 - -
Chy07g00300 1000 SUPERFAMILY CheY-like 848 996 IPR011006 -
Chy07g00300 1000 CDD REC_hyHK_CKI1_RcsC-like 850 991 - -
Chy07g00300 1000 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Chy07g00300 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Chy07g00300 1000 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Chy07g00300 1000 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 996 - -
Chy07g00300 1000 Gene3D - 845 995 - -
Chy07g00300 1000 Coils Coil 181 208 - -
Chy07g00300 1000 MobiDBLite consensus disorder prediction 762 841 - -
Chy07g00300 1000 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Chy07g00300 1000 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Chy07g00300 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Chy07g00300 1000 Coils Coil 92 112 - -
Chy07g00300 1000 Coils Coil 342 362 - -
Chy07g00300 1000 Pfam Response regulator receiver domain 850 917 IPR001789 GO:0000160
Chy07g00300 1000 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Chy07g00300 1000 SMART HKATPase_4 482 672 IPR003594 -
Chy07g00300 1000 MobiDBLite consensus disorder prediction 762 800 - -
Chy07g00300 1000 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 996 - -
Chy07g00300 1000 SMART REC_2 848 991 IPR001789 GO:0000160
Chy07g00300 1000 MobiDBLite consensus disorder prediction 801 831 - -
Chy07g00300 1000 Gene3D PAS domain 205 335 - -
Chy07g00300 1000 MobiDBLite consensus disorder prediction 572 587 - -
Chy07g00300 1000 MobiDBLite consensus disorder prediction 566 587 - -
Chy07g00300 1000 Gene3D - 435 676 IPR036890 -
Chy07g00300 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 672 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00300 - - - csv:101219807 1868.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00300 Chy-Chr7:2468997 Chy10g00085 Chy-Chr10:2159657 2.07E-62 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g02240 . 5 1196 Histidine Kinase Gene Family AT2G17820 65.3 0.0e+00 1457.2
Chy10g00085 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1350.9
Chy11g01787 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 941.8
Chy11g00704 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.1 2.2e-269 925.6
Chy07g00300 . 1 995 Histidine Kinase Gene Family AT5G10720 57.3 3.3e-290 994.6
Chy03g00986 . 35 1154 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1822.4
Chy03g00990 . 3 1144 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1617.4
Chy06g00756 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1192.9
Chy01g00529 . 18 952 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1082.8
Chy06g00756 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Chy12g00013 . 21 1043 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1239.9
Chy03g00986 . 55 1088 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1085.9
Chy03g00990 . 22 1077 Histidine Kinase Gene Family AT2G18790 50.9 1.8e-306 1048.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT2G18790 56.0 8.2e-299 1023.5
Chy01g00529 . 18 954 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1223.8
Chy06g00756 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.1 0.0e+00 1150.2
Chy03g00986 . 43 1148 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.4
Chy01g00528 . 1 160 Histidine Kinase Gene Family AT5G35840 52.4 9.3e-37 152.9
Chy06g00756 . 3 1123 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1712.2
Chy12g00013 . 22 1105 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1283.5
Chy03g00986 . 42 1149 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1137.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT4G16250 54.4 1.2e-292 1003.0
Chy12g00013 . 31 1119 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1375.5
Chy06g00756 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1271.5
Chy01g00529 . 27 952 Histidine Kinase Gene Family AT4G18130 50.1 3.2e-255 878.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18279 PF02518 HATPase_c 9.50E-28 CL0025 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00300 Chy_Chr07 FPKM 0.765683 1.056026 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0