Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy07g00305 | ATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAAGCACCTGTAAGCGGTGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGTTATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATTGATGGTGTGGAAGGAGAAATAGTTGGTCTCTTTGGTGTTTTCGATGGTCATGGTGGAGCACGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGCCATCCAAAGTTCATTTCAGACACCAAATCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTGAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAACGTTGGCGATTCCAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGGGATCATAAGCCTGACCAAACTGATGAGCGACGGCGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTATTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCACTTGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTCGTCTCTAATGAGGAAGCTGTCGCTATGACTAAACCAATTCAGGACCCCGAAGAGGCAGCAAAAAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCAAATCAAGGAAGTCCCTCTCGCGGAACGTCTGGCTAA | 882 | 45.69 | MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSRGTSG* | 294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2510023 | 2513420 | - | Chy7G131350.1 | Chy07g00305 | 230316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy07g00305 | 293 | Pfam | Protein phosphatase 2C | 63 | 273 | IPR001932 | - | |
| Chy07g00305 | 293 | ProSitePatterns | PPM-type phosphatase domain signature. | 65 | 73 | IPR000222 | GO:0043169 | |
| Chy07g00305 | 293 | SMART | PP2C_SIG_2 | 45 | 280 | IPR001932 | - | |
| Chy07g00305 | 293 | Gene3D | - | 26 | 285 | IPR036457 | - | |
| Chy07g00305 | 293 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 3 | 287 | - | - | |
| Chy07g00305 | 293 | SMART | PP2C_4 | 24 | 278 | IPR001932 | - | |
| Chy07g00305 | 293 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 287 | - | - | |
| Chy07g00305 | 293 | SUPERFAMILY | PP2C-like | 28 | 280 | IPR036457 | - | |
| Chy07g00305 | 293 | CDD | PP2Cc | 33 | 280 | IPR001932 | - | |
| Chy07g00305 | 293 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 280 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01787 | Chy-Chr1:23499833 | Chy07g00305 | Chy-Chr7:2510023 | 4.49E-42 | dispersed | |
| Chy02g02336 | Chy-Chr2:27308917 | Chy07g00305 | Chy-Chr7:2510023 | 1.02E-34 | dispersed | |
| Chy03g00572 | Chy-Chr3:8152002 | Chy07g00305 | Chy-Chr7:2510023 | 1.81E-129 | dispersed | |
| Chy04g01673 | Chy-Chr4:23112345 | Chy07g00305 | Chy-Chr7:2510023 | 8.38E-47 | dispersed | |
| Chy05g00225 | Chy-Chr5:1873753 | Chy07g00305 | Chy-Chr7:2510023 | 5.36E-19 | dispersed | |
| Chy06g01251 | Chy-Chr6:11498707 | Chy07g00305 | Chy-Chr7:2510023 | 5.32E-121 | dispersed | |
| Chy07g00305 | Chy-Chr7:2510023 | Chy07g00835 | Chy-Chr7:10720972 | 4.22E-67 | dispersed | |
| Chy11g01447 | Chy-Chr11:21275697 | Chy07g00305 | Chy-Chr7:2510023 | 6.44E-28 | dispersed | |
| Chy11g01602 | Chy-Chr11:22569796 | Chy07g00305 | Chy-Chr7:2510023 | 5.86E-42 | dispersed | |
| Chy07g00305 | Chy-Chr7:2510023 | Chy04g00256 | Chy-Chr4:2272719 | 3.41E-72 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy07g00305 | K17506 | - | csv:101216117 | 579.711 |