Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00329 ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTTCCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAAACAGGAAAGCACGGTCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCACGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTGTTTTGGTTATCAATTTTATCGGTGAAACCCTGTTAGATAGATTGTTTGTCCAGTATCATCGGTTTGATGTCTTTAGACTCTCCTACGAATGTAATTTGGAAATAAAGGAGCAAATATTTGTGTGGAGGGATTGTTATACAAGCATAGATGGAAAAGGAAGCAATGAATCATTTATATGTGCTGAAGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAACCTGCTCAAACAGAGGGAACCTCATTCCTTCTGTTCCCATTTCATGCTTAATATTCCATTCTCAAGATATTGTGAAGATATGGCCATATGGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCAGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATTGGCCCGAAGTAG 747 42.3 MSDEEHHFESKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFIVLVINFIGETLLDRLFVQYHRFDVFRLSYECNLEIKEQIFVWRDCYTSIDGKGSNESFICAEVSLLTDSGDTKDDLRLPTDDNLLKQREPHSFCSHFMLNIPFSRYCEDMAIWIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2671510 2673530 - Chy7G131590.1 Chy07g00329 230340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00329 248 TIGRFAM eIF_5A: translation elongation factor IF5A 18 100 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy07g00329 248 MobiDBLite consensus disorder prediction 1 20 - -
Chy07g00329 248 PANTHER BNAA07G09420D PROTEIN 165 186 - -
Chy07g00329 248 PANTHER BNAA07G09420D PROTEIN 1 104 - -
Chy07g00329 248 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 216 245 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy07g00329 248 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 212 243 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy07g00329 248 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 165 186 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy07g00329 248 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy07g00329 248 PANTHER BNAA07G09420D PROTEIN 216 245 - -
Chy07g00329 248 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 104 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy07g00329 248 SMART eIF_5a_2 85 243 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy07g00329 248 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Chy07g00329 248 Gene3D - 207 247 IPR012340 -
Chy07g00329 248 Gene3D - 153 192 IPR012340 -
Chy07g00329 248 SUPERFAMILY Nucleic acid-binding proteins 211 245 IPR012340 -
Chy07g00329 248 Gene3D - 1 85 IPR014722 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00329 Chy-Chr7:2671510 Chy10g01040 Chy-Chr10:15654670 6.44E-68 dispersed
Chy02g02123 Chy-Chr2:25529601 Chy07g00329 Chy-Chr7:2671510 5.00E-81 wgd
Chy03g01084 Chy-Chr3:14216586 Chy07g00329 Chy-Chr7:2671510 1.02E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00329 K03263 K02180 csv:101213295 215.698