Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00343 ATGACGGTTGAGCCTAGACTCGATGACCCAGTTGACCAATTTCCCACTGGAATGCGTGTTCTTGCTGTTGACGATGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTCATTATGCTCTCTGCAAATGGTGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGTGATTACTTGTTGAAGCCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCCGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAATCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGAAGATGATGACCAGGACTATGGGCAAGATAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTACATAGGAAGTTTGTAAATGCAGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACACGAGAAAATGTAGCAAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGGATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTGGCGGAATTGGGAATTTCCACTCTTTGACTGGACCTCCACAGTTTCCAAACACTTCTTATAGATCTATCCCAACCACCGGGATGTTCGGTCGATTGAATAGTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCACCGGGAACAGTCCAACTGGGTAATTTGAGCAATTCTAGCAATGATCAGTCTACATTTCAGCCAATCGTGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGTGGAATGCCTGAGCCATCAGAACTTGATCGACTCCAACATGTTAAGCATGGGACCCACGTGGACAATCTCACTTCTGCTTTTGATGAACGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGGAAACATGTCTTCCAGTACGCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTCGATTCCAGAAGCCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCAATCTTCTATTTCGGTAGTATCTTCAAATTCAGATAGCCCACGTCCTTCATTAGATAATGTTAGATGCACTGGTGACAATTGGTCAAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTGGCAACCTTTCTAATGTTGCTACTTCCTACCATGGGCAGTTGAGAGATAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCAATAACTTCATTATCTACTCAGTCCCATGAATCGAGAATAGATTCTCAACGTCAAGCAGCTACAACTAGCAACAGATTTGATCAATTGATCTCAAAGGTTCCTGTTCAGGATTGGAATGATCATAAAGAGGATGCCTATTACCACACAACTATGGCCTGTAGCTCATCCAATTCTTTGATTCCAGTGATTGGTGCTGCAGAGACTTTGTCCAAGCGTTTGGAAAATCCTAACGCAATCTTCTCCGGTAGCAAGGATTTTAATGTGACTGGTCAAGCAAACGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAGACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCAAGCAACTGTGGCTCCTTGGAAGACATAGCGTGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGAGTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA 2070 42.51 MTVEPRLDDPVDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEESADPNGKFNKKRKDQNYNEDDDQDYGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGNFHSLTGPPQFPNTSYRSIPTTGMFGRLNSPACMGMHGLSSPGTVQLGNLSNSSNDQSTFQPIVLSGNRSGNIFRGMPEPSELDRLQHVKHGTHVDNLTSAFDERTVFPASIGLPNGNMSSSTLSNPLLGLTNDPSIPEAQHHEVNGGRKFGTQSSISVVSSNSDSPRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSGNLSNVATSYHGQLRDNTTSALHIGNCLSDISSITSLSTQSHESRIDSQRQAATTSNRFDQLISKVPVQDWNDHKEDAYYHTTMACSSSNSLIPVIGAAETLSKRLENPNAIFSGSKDFNVTGQANVLDHAMVEHDQFKKSTMETSLMLRQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGEFGCDNYPIGTCM* 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2803571 2807681 - Chy7G131730.1 Chy07g00343 230354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00343 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Chy07g00343 689 Gene3D - 198 256 - -
Chy07g00343 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Chy07g00343 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Chy07g00343 689 MobiDBLite consensus disorder prediction 141 180 - -
Chy07g00343 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Chy07g00343 689 CDD REC_typeB_ARR-like 20 134 - -
Chy07g00343 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Chy07g00343 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Chy07g00343 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Chy07g00343 689 Gene3D - 18 197 - -
Chy07g00343 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Chy07g00343 689 MobiDBLite consensus disorder prediction 141 196 - -
Chy07g00343 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy07g00343 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Chy07g00343 689 SMART REC_2 18 130 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00343 - - K14491 csv:101215220 1341.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02217 Chy-Chr2:26278279 Chy07g00343 Chy-Chr7:2803571 8.39E-47 dispersed
Chy02g02219 Chy-Chr2:26286444 Chy07g00343 Chy-Chr7:2803571 3.56E-66 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy07g00343 Chy-Chr7:2803571 1.83E-87 dispersed
Chy04g00056 Chy-Chr4:603158 Chy07g00343 Chy-Chr7:2803571 7.74E-13 dispersed
Chy05g01262 Chy-Chr5:16978136 Chy07g00343 Chy-Chr7:2803571 1.00E-136 dispersed
Chy06g00735 Chy-Chr6:5017383 Chy07g00343 Chy-Chr7:2803571 2.42E-109 dispersed
Chy07g00343 Chy-Chr7:2803571 Chy11g01546 Chy-Chr11:22011151 3.88E-110 dispersed
Chy11g00670 Chy-Chr11:8310539 Chy07g00343 Chy-Chr7:2803571 3.31E-18 dispersed
Chy12g00223 Chy-Chr12:2599006 Chy07g00343 Chy-Chr7:2803571 1.13E-26 dispersed
Chy02g02099 Chy-Chr2:25279827 Chy07g00343 Chy-Chr7:2803571 1.76E-169 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy10g00941 . 1 175 Response Regulator Gene Family AT1G59940 65.4 5.8e-56 214.9
Chy02g02547 . 9 158 Response Regulator Gene Family AT1G59940 62.3 8.4e-47 184.5
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G59940 58.7 3.1e-41 166.0
Chy10g00941 . 18 185 Response Regulator Gene Family AT1G10470 67.9 4.9e-55 211.5
Chy02g02547 . 29 167 Response Regulator Gene Family AT1G10470 66.2 4.6e-45 178.3
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G10470 56.7 2.9e-39 159.1
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy02g02547 . 23 163 Response Regulator Gene Family AT5G62920 73.8 9.5e-51 196.8
Chy10g00941 . 25 175 Response Regulator Gene Family AT5G62920 68.2 3.0e-49 191.8
Chy10g01363 . 2 171 Response Regulator Gene Family AT5G62920 52.0 8.3e-39 157.1
Chy08g00289 . 17 164 Response Regulator Gene Family AT5G62920 54.7 7.8e-37 150.6
Chy02g02547 . 29 162 Response Regulator Gene Family AT1G19050 74.6 2.6e-49 192.2
Chy10g00941 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Chy10g01363 . 9 153 Response Regulator Gene Family AT1G19050 55.2 1.0e-37 153.7
Chy08g00289 . 8 270 Response Regulator Gene Family AT2G41310 51.0 1.4e-56 216.5
Chy10g01363 . 3 149 Response Regulator Gene Family AT2G41310 66.0 3.1e-48 188.7
Chy03g00788 . 20 160 Response Regulator Gene Family AT2G41310 62.7 1.4e-43 173.3
Chy10g00941 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Chy02g02547 . 28 159 Response Regulator Gene Family AT2G41310 61.9 8.2e-41 164.1
Chy08g00289 . 8 270 Response Regulator Gene Family AT3G57040 51.5 8.2e-60 227.3
Chy10g01363 . 8 149 Response Regulator Gene Family AT3G57040 70.4 4.5e-50 194.9
Chy03g00788 . 20 194 Response Regulator Gene Family AT3G57040 53.6 3.4e-45 178.7
Chy10g00941 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Chy02g02547 . 25 159 Response Regulator Gene Family AT3G57040 61.8 1.0e-41 167.2
Chy02g02547 . 24 182 Response Regulator Gene Family AT1G74890 69.3 4.3e-52 201.4
Chy10g00941 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Chy10g01363 . 2 159 Response Regulator Gene Family AT1G74890 57.6 1.5e-41 166.4
Chy10g00941 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Chy02g02547 . 29 160 Response Regulator Gene Family AT2G40670 57.8 5.3e-37 151.0
Chy10g00941 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Chy02g02547 . 24 160 Response Regulator Gene Family AT3G56380 58.0 1.4e-39 159.5
Chy10g01363 . 2 148 Response Regulator Gene Family AT3G56380 54.7 1.7e-37 152.5
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy12g01526 . 35 584 Response Regulator Gene Family AT5G61380 50.5 4.1e-143 505.4
Chy08g00806 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.1e-55 213.4
Chy09g01472 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Chy08g00806 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.8e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009381 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18282 PF00072 Response_reg 3.20E-23 CL0304 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00343 Chy_Chr07 FPKM 8.895212 9.166468 18.98526 18.276079 6.028505 6.364441 5.698218 7.148172 6.63951 9.260259