Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00348 ATGGCCAGGCCTCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGTTCTTGGGTATCCGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGGACATTTGAAACGGCGGAGGATGCAGCGAGAGCTTATGATGAAGCTGCAAGGTTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAGTCCAAGTGCAATTCAGTCATCAAATTCCAGGATTTTATCGTCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGGAGATTAGTAACCAGGGTTCAGCGGAGTTTAAAACCGACATTACCGCGGCGTTTCCGGCACCGGCGTCGACGAGTTCGGTGGTGGAGGAGATTATACCGGCGGGGGAAGAAGTGCCGTGTGCGGCGGATTGGATGATGCAAAGTGTGAAAATAGAGACTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCATATTGAGCAAATGATTGAGGAGCTTCGTTACTATGGATCCATGGAGTTTTGTTTGTGA 534 45.88 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYSPSAIQSSNSRILSSNLTAKLHRCYMASLEISNQGSAEFKTDITAAFPAPASTSSVVEEIIPAGEEVPCAADWMMQSVKIETEFGELKLLEDDHIEQMIEELRYYGSMEFCL* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2841084 2841723 - Chy7G131780.1 Chy07g00348 230359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00348 177 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Chy07g00348 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 176 - -
Chy07g00348 177 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Chy07g00348 177 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Chy07g00348 177 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 176 - -
Chy07g00348 177 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Chy07g00348 177 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Chy07g00348 177 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Chy07g00348 177 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Chy07g00348 177 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02005 Chy-Chr2:23956117 Chy07g00348 Chy-Chr7:2841084 6.56E-34 dispersed
Chy03g01094 Chy-Chr3:14341367 Chy07g00348 Chy-Chr7:2841084 2.53E-70 dispersed
Chy05g01314 Chy-Chr5:17323731 Chy07g00348 Chy-Chr7:2841084 5.98E-34 dispersed
Chy07g00348 Chy-Chr7:2841084 Chy07g01612 Chy-Chr7:20241031 6.38E-36 dispersed
Chy07g01592 Chy-Chr7:20072370 Chy07g00348 Chy-Chr7:2841084 9.55E-49 transposed
Chy01g01952 Chy-Chr1:24725630 Chy07g00348 Chy-Chr7:2841084 1.21E-60 wgd
Chy03g01093 Chy-Chr3:14334354 Chy07g00348 Chy-Chr7:2841084 8.19E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18284 PF00847 AP2 6.20E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00348 - - csv:101216179 335.88