Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00355 ATGGCGTATCACAATCACCTCTCTCAAGACCTTCCTCTTCACTTCTCTGACCATCACCACCAAAATCAACCTCTGTCTGATTCTTCTTCTCTCCGTAACATTTTGCCGGACCAACTTCCCGCCGGCCACACCTCGCCGGACCCCAAGTCTCAACAACCCCATCATCACCACCATCATCAACACCCTCTTCAGACTGCCCCCAATTGGCTCAACAACGCACTCCTTCGTAACCAAAACCCCCATTCTCACTTCTCTACCGACACCGCCACCACCGCCGCTGCTGCTAATACTAATTTCCTCAACCTTCATACAACTGCATCTGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGGCCGATTCTTCACCGTAACCATAGCGATGTTATAGATGATGTCGCCGCCGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTGTCTCATGATTCTGGTGACTTGAAGAACGATGCTAATAGTGGTGATGGATTGAATAAAAGTGAAGGTATGGTGATGGAACCTGGTGCGGGTGGAGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTATGAGCAGCTTCTCTCCGCTCATGTTGCTTGTCTTCGTATCGCGACCCCGGTCGATCAATTACCGAGGATCGACGCACAGCTCGCTCAGTCTCAGAATGTCGTCGCCAAGTACTCCGCCTTGGGCCACTCGGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTCGATCAATTCATGACACATTATGTTATTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCTATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGTTTAACAGGAGTTTCACCTGGCGAAGGTACAGGAGCAACAATGTCCGACGACGACGACGACCAGGTTGACAGTGATGCAAATCTGTTTGATGGAAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCACGAATTAAAAGCGGGTTACAAGGAGAAAATTGTTGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGATTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGGTAA 1377 48.08 MAYHNHLSQDLPLHFSDHHHQNQPLSDSSSLRNILPDQLPAGHTSPDPKSQQPHHHHHHQHPLQTAPNWLNNALLRNQNPHSHFSTDTATTAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVILLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKR* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2902533 2905978 + Chy7G131850.1 Chy07g00355 230366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00355 458 Gene3D - 382 443 - -
Chy07g00355 458 SMART ELK_2 361 382 IPR005539 GO:0003677
Chy07g00355 458 MobiDBLite consensus disorder prediction 14 63 - -
Chy07g00355 458 Pfam KNOX2 domain 253 303 IPR005541 GO:0003677|GO:0005634
Chy07g00355 458 MobiDBLite consensus disorder prediction 303 322 - -
Chy07g00355 458 Pfam KNOX1 domain 194 235 IPR005540 GO:0003677|GO:0005634
Chy07g00355 458 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 458 - -
Chy07g00355 458 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677|GO:0006355
Chy07g00355 458 SMART KNOX2_2 249 304 IPR005541 GO:0003677|GO:0005634
Chy07g00355 458 Pfam ELK domain 361 382 IPR005539 GO:0003677
Chy07g00355 458 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677
Chy07g00355 458 ProSiteProfiles ELK domain profile. 361 381 IPR005539 GO:0003677
Chy07g00355 458 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 54 458 - -
Chy07g00355 458 MobiDBLite consensus disorder prediction 438 458 - -
Chy07g00355 458 SUPERFAMILY Homeodomain-like 383 447 IPR009057 -
Chy07g00355 458 SMART HOX_1 383 448 IPR001356 GO:0003677
Chy07g00355 458 CDD homeodomain 384 445 IPR001356 GO:0003677
Chy07g00355 458 SMART KNOX1_2 192 236 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00355 Chy-Chr7:2902533 Chy10g00887 Chy-Chr10:14651229 2.93E-16 dispersed
Chy09g01175 Chy-Chr9:13952596 Chy07g00355 Chy-Chr7:2902533 2.41E-132 transposed
Chy03g01099 Chy-Chr3:14381849 Chy07g00355 Chy-Chr7:2902533 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18285 PF03791 KNOX2 5.70E-21 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00355 - - csv:101217292 897.501