Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00388 ATGATGGATAAGAAGGAGAAGAACTCCATCACGGTGGCTCCTTTTGAGTGTGCTTGGCTTAAGGATTTAAGATTTCGGGAAGCAGGACGGGGGTGTGTGGCTTTTGAAGCTTCCGCTCATAATGATGTCACACTGGTGTTCCGAGAGAACGTGGGGAGTCAACATTACCATTACAAACGAGATATGAGTCCTCATTATACGGTTATAATAGGTAGTCACCGAAATCGACGTCTAAGGATTATAGCCGATGGGAGAACTGTTGTTGATGTAGAGGGTGTTGCTCTTTGCAGTTCCTCAGCGTTTCAAAGCTATTGGATCAGTGTCTATGATGGTTTGATCAGCATTGGGAAGGGAAGATACCCTTTTCAGAATATGGTCTTTCAATGGCTTGATACAAATCCAAACTGCAGCATTCAATATATTGGGCTTAGTAGCTGGGATAAACATGTGGGATATAGAAATGTTAATGTTTTGCCGCTGACGCAGGATCATATTTCCTTGTGGAAGCATGTGGATAACAGTGATGAAGGCGAGGACGATGTAGAATTGGAGTTTGAAGATGAATACAAAGATTACAAGAACTGGGGCCTTGAACATTTTCTTGAAAATTGGGATTTATCAGATATACTTTTCTGTGTAGATTCTGGAGAAACACTTGTGCCTGCTCATAAAGCTATCTTATTTGCTTCGGGAAACTTTCCCTCGAATTTATCGCAAGTTGTCGTGCAGCTACATGGAATATCATATCCAGTTCTCCATGCTCTTCTCCAATATATTTACACAGGTCAAACTGAGATTCTGGAGTCTCAACTTGGTTCCTTGAGGGATTTAGCCTCACAACTTGAAGTGATAGCGTTAGTGAACCAGTGTGATGACATGATGGGACAATTAAAACTGAACAAAAAGTTGTTGGACTCGGGCAATAGGGTGGAATTATCATATCCAAGGACTCAGCCCCATTGTACTACAGTATTCCCCTCCGGGCTTCCACTAAACGTACAGAGGCTCAAACAATTACAATGTACTAGCGAGTTCAGTGATGTGTCCATCTATATACAAGGTCACGGATTTGTTGCCCATGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCATTTGAAAGGATGTTTACCAATGGAATGAGTGAAACAGCGTCCTCTGAGGTTTATATTAGGGATGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAATTGAGTAAAGATGGTACAATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTCTCTCTTCTTCATCAAGAATGCTGCAAAATACTTCTAGAATGCCTTTCGGAGGACTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAACTTGTGAGAGGAAGTTCTCAATGCACTTTGATTATTGTACGACTGCAAACATTGAATTTGTTATGTTAGATGAGTCAACTTTCCTCAAAATCCTTCAGTGCCCTGATTTGACAGTGACGTCTGAGGAAAAAGTACTCAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTATGTGGGTGGATGGCGGTAGATGAGCTTATGACGTTTTCAACCCCCGAAATCCTTTTTGGTGAGAGACTTCAATCAGTTCAGGATTTACTTTCTCTCGTGCGATTTCCATTACTCCCATATGACTTGTTGAAGAAGTTGGAGAACAGTAGCATTAGCAGGAAGATTCGTACCTTTAAGAATCTTGTGAAGGAAGCTATCGACTTTGTGAAACTTGAACCATCAAGCCTAGAGGACAAGAAGAAGAACAATGTGAGATATCAACATAGACGGTCTAGTTATAAGGAGCTGCAGTACATTTGTGATGGGGACAGCAACGGAGTTCTATTCTTTGCCGGTACATCATATGGAGAGCACCAGTGGGTTAATCCCATTCTTTCAAAGAAAATTACTATTACAACAAGCAGTCCACCTTCAAGATATACAGATCCAAAGGTTCTGGTCTCGAGAACTTACCAGGGAACTTCCTTTGCGGGCCTTCGCGTGGAAGATGGGAAAACTTGTTCATGGTGGATGGTAGATATTGGCGAAGATCATCAGCTGATGTGCAATTACTACACGTTAAGACAAGATGGTTCAAGGGCATTCATCAGATACTGGAATCTTCAGGGGTCATTCGATGGGAAAACTTGGACGAACTTGCGAGTACATGAGAACGATCAGACGGTCTGCAAACCTGGCCAGTTTGCATCATGGGCAGTAACTGGACCAAACGCTTTACTTCCATTTAGATTCTTCCGTGTTCTTCTCACAGCCCCAACAACTGATGCTTCAAATCCATGGAACTTGTGCATTTGCTTTCTGGAACTTTATGGCTACTTCCTCTAG 2421 41.68 MMDKKEKNSITVAPFECAWLKDLRFREAGRGCVAFEASAHNDVTLVFRENVGSQHYHYKRDMSPHYTVIIGSHRNRRLRIIADGRTVVDVEGVALCSSSAFQSYWISVYDGLISIGKGRYPFQNMVFQWLDTNPNCSIQYIGLSSWDKHVGYRNVNVLPLTQDHISLWKHVDNSDEGEDDVELEFEDEYKDYKNWGLEHFLENWDLSDILFCVDSGETLVPAHKAILFASGNFPSNLSQVVVQLHGISYPVLHALLQYIYTGQTEILESQLGSLRDLASQLEVIALVNQCDDMMGQLKLNKKLLDSGNRVELSYPRTQPHCTTVFPSGLPLNVQRLKQLQCTSEFSDVSIYIQGHGFVAHVHKIILSLWSMPFERMFTNGMSETASSEVYIRDVSPEAFQTMLKFMYSGELSKDGTMESDVLLLQLLFLADQFGVSLLHQECCKILLECLSEDSVCSILQVVSSIPCCKLIEETCERKFSMHFDYCTTANIEFVMLDESTFLKILQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPEILFGERLQSVQDLLSLVRFPLLPYDLLKKLENSSISRKIRTFKNLVKEAIDFVKLEPSSLEDKKKNNVRYQHRRSSYKELQYICDGDSNGVLFFAGTSYGEHQWVNPILSKKITITTSSPPSRYTDPKVLVSRTYQGTSFAGLRVEDGKTCSWWMVDIGEDHQLMCNYYTLRQDGSRAFIRYWNLQGSFDGKTWTNLRVHENDQTVCKPGQFASWAVTGPNALLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL* 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3093446 3099138 - Chy7G132180.1 Chy07g00388 230399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00388 806 SUPERFAMILY POZ domain 196 294 IPR011333 -
Chy07g00388 806 SUPERFAMILY Galactose-binding domain-like 649 805 IPR008979 -
Chy07g00388 806 Pfam BTB And C-terminal Kelch 462 526 IPR011705 -
Chy07g00388 806 Gene3D - 482 601 - -
Chy07g00388 806 Pfam F5/8 type C domain 663 795 IPR000421 -
Chy07g00388 806 SUPERFAMILY POZ domain 332 447 IPR011333 -
Chy07g00388 806 SMART BACK_2 456 579 IPR011705 -
Chy07g00388 806 Pfam Farnesoic acid 0-methyl transferase 53 150 IPR022041 -
Chy07g00388 806 SMART BTB_4 207 298 IPR000210 GO:0005515
Chy07g00388 806 SMART BTB_4 346 450 IPR000210 GO:0005515
Chy07g00388 806 CDD BTB_POZ_ZBTB_KLHL-like 206 281 - -
Chy07g00388 806 Gene3D - 613 804 - -
Chy07g00388 806 ProSiteProfiles BTB domain profile. 207 268 IPR000210 GO:0005515
Chy07g00388 806 Gene3D Potassium Channel Kv1.1; Chain A 194 310 IPR011333 -
Chy07g00388 806 Pfam BTB/POZ domain 198 294 IPR000210 GO:0005515
Chy07g00388 806 Pfam BTB/POZ domain 336 448 IPR000210 GO:0005515
Chy07g00388 806 CDD BTB_POZ_ZBTB_KLHL-like 345 421 - -
Chy07g00388 806 Gene3D Potassium Channel Kv1.1; Chain A 317 481 IPR011333 -
Chy07g00388 806 PANTHER OS05G0345500 PROTEIN 1 805 - -
Chy07g00388 806 ProSiteProfiles BTB domain profile. 346 415 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00388 - - - csv:101222966 1642.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00388 Chy-Chr7:3093446 Chy11g01678 Chy-Chr11:23247742 3.89E-08 dispersed
Chy07g00388 Chy-Chr7:3093446 Chy06g00120 Chy-Chr6:795438 4.53E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00388 Chy_Chr07 FPKM 14.802267 16.805141 24.469725 24.139458 22.297449 20.20442 20.44458 13.763944 14.453797 15.005074