Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy07g00389 | ATGAACGTTAAAGGGAAGGAAAAGACGGTTTTAGGGTTGAAAAAGGATTTTGGTAGTGAACGGGAAGAAAATTTGAAAGCACATGGAGAGGTGAAGGAAATGGCTGGATCGGATGAGAACAATCCTGGAGTGATCGGCCGGGCAAATCTCCATGGGAGTTTACGAATTGGTGGTGGCGGCGGTGGCAAATTGGTCGTGGGGATGGGTCAAAACCGCAGAGCTTTGAGCAGCATTAATGGAAATGTTGCAGCAGCACCTCCTGTCCCTCATCCCTGTGCAGTCCTGAAAAGAGGATTAACAGAAACTGAAGTTTTCCTCAACAATAAAGACCCTCCGATTCCAATTCATCGACCCATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCACCAACCACCCGTGCCTGAGGTAGATAAAAAACCACTGCAATCTGCTGTAACTAGAAAAGAGTCTTCAGATCATCATACCACCATAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCAATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAACCAGTCATTGACATAGACAGCCGCGATAAAAGTGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTACTATAGGAAATCCGAGGTTTCTGGCTGTGTCTCACCAAACTACATGGCTCGGCAAGCAGATATCAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACTTAACAGTCAACCTGATTGACAGATTCTTAGCGGTTCACTCAGTTGTGAGAAAGAAACTCCAGCTTGTTGGAGTGACAGCCATGCTTATTGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGGAAAGAAGTTCTTGACATGGAGAAGTTGATGATCAATACTTTACAGTTCAATCTGTCTGTTCCAACTCCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTCCTCTCCTTCTTCATGGTGGAGCTCTGTCTAGTAGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACATTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGGTATTCACAAGAACAACTTCTGGAATGTTCAAAGCTGATGGTGGGGTTTCATAAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGCACATCAAAGTTTGGATATACTGCTAGAAGTGAGCCAGCAGGCTTTCTATTGGAAGAAAGATTGTGA | 1422 | 44.3 | MNVKGKEKTVLGLKKDFGSEREENLKAHGEVKEMAGSDENNPGVIGRANLHGSLRIGGGGGGKLVVGMGQNRRALSSINGNVAAAPPVPHPCAVLKRGLTETEVFLNNKDPPIPIHRPITRKFAAQLANKHQPPVPEVDKKPLQSAVTRKESSDHHTTIEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKSDQLAVVEYIDDLYAYYRKSEVSGCVSPNYMARQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTLNGFKEWSKTSEWHTGYSQEQLLECSKLMVGFHKKAGTGKLTGVHRKYCTSKFGYTARSEPAGFLLEERL* | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3102293 | 3105631 | - | Chy7G132190.1 | Chy07g00389 | 230400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy07g00389 | 473 | Gene3D | - | 220 | 458 | - | - | |
| Chy07g00389 | 473 | MobiDBLite | consensus disorder prediction | 143 | 163 | - | - | |
| Chy07g00389 | 473 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Chy07g00389 | 473 | Pfam | Cyclin, C-terminal domain | 348 | 461 | IPR004367 | - | |
| Chy07g00389 | 473 | SMART | cyclin_7 | 352 | 434 | IPR013763 | - | |
| Chy07g00389 | 473 | SMART | cyclin_7 | 255 | 339 | IPR013763 | - | |
| Chy07g00389 | 473 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Chy07g00389 | 473 | PANTHER | CYCLIN-B2-3-RELATED | 60 | 466 | - | - | |
| Chy07g00389 | 473 | SUPERFAMILY | Cyclin-like | 347 | 464 | IPR036915 | - | |
| Chy07g00389 | 473 | MobiDBLite | consensus disorder prediction | 131 | 164 | - | - | |
| Chy07g00389 | 473 | SMART | Cyclin_C_2 | 348 | 465 | IPR004367 | - | |
| Chy07g00389 | 473 | ProSitePatterns | Cyclins signature. | 250 | 281 | IPR006671 | - | |
| Chy07g00389 | 473 | CDD | CYCLIN | 249 | 337 | IPR013763 | - | |
| Chy07g00389 | 473 | CDD | CYCLIN | 346 | 433 | IPR013763 | - | |
| Chy07g00389 | 473 | Pfam | Cyclin, N-terminal domain | 220 | 346 | IPR006671 | - | |
| Chy07g00389 | 473 | Gene3D | - | 234 | 346 | - | - | |
| Chy07g00389 | 473 | PANTHER | CYCLINS | 60 | 466 | IPR039361 | - | |
| Chy07g00389 | 473 | SUPERFAMILY | Cyclin-like | 209 | 345 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy07g00171 | Chy-Chr7:1422202 | Chy07g00389 | Chy-Chr7:3102293 | 3.57E-55 | dispersed | |
| Chy01g00850 | Chy-Chr1:7454073 | Chy07g00389 | Chy-Chr7:3102293 | 1.16E-76 | transposed | |
| Chy03g01436 | Chy-Chr3:17025822 | Chy07g00389 | Chy-Chr7:3102293 | 9.54E-07 | transposed | |
| Chy05g00192 | Chy-Chr5:1517240 | Chy07g00389 | Chy-Chr7:3102293 | 7.46E-87 | transposed | |
| Chy08g00238 | Chy-Chr8:5394084 | Chy07g00389 | Chy-Chr7:3102293 | 6.80E-22 | transposed | |
| Chy08g00239 | Chy-Chr8:5394553 | Chy07g00389 | Chy-Chr7:3102293 | 7.70E-55 | transposed | |
| Chy02g00511 | Chy-Chr2:3107784 | Chy07g00389 | Chy-Chr7:3102293 | 2.98E-168 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy07g00389 | K21777 | - | csv:101223199 | 828.165 |