Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00400 ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTACAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCGAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGCCAAATATCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCCAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAGCATTTGGTTCCGAAGTCCGGCAACATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGAAATAATATGTCGAATGATAAAATGAACGTACCAGACTACTCTCCATACACTCCTTGTGAAGGATATCACTTGGTCGAGTGA 810 44.57 MEWQNQQQQNQTEQLQMQVEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNVPDYSPYTPCEGYHLVE* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3182409 3183736 + Chy7G132300.1 Chy07g00400 230411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00400 269 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Chy07g00400 269 SUPERFAMILY Homeodomain-like 95 158 IPR009057 -
Chy07g00400 269 SMART HOX_1 94 161 IPR001356 GO:0003677
Chy07g00400 269 MobiDBLite consensus disorder prediction 171 185 - -
Chy07g00400 269 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 265 IPR044559 GO:0003700
Chy07g00400 269 Coils Coil 5 25 - -
Chy07g00400 269 CDD homeodomain 96 158 IPR001356 GO:0003677
Chy07g00400 269 MobiDBLite consensus disorder prediction 154 185 - -
Chy07g00400 269 Gene3D - 98 162 - -
Chy07g00400 269 PANTHER - 1 265 - -
Chy07g00400 269 Pfam Homeodomain 96 156 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01735 Chy-Chr4:23725336 Chy07g00400 Chy-Chr7:3182409 1.13E-14 dispersed
Chy06g02276 Chy-Chr6:26696933 Chy07g00400 Chy-Chr7:3182409 3.06E-98 dispersed
Chy07g00400 Chy-Chr7:3182409 Chy11g01253 Chy-Chr11:18672533 1.93E-12 dispersed
Chy07g00400 Chy-Chr7:3182409 Chy12g01399 Chy-Chr12:18125161 3.42E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18289 PF00046 Homeodomain 8.50E-18 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00400 - - csv:101204139 528.094