Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00400 ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTACAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCGAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGCCAAATATCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCCAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAGCATTTGGTTCCGAAGTCCGGCAACATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGAAATAATATGTCGAATGATAAAATGAACGTACCAGACTACTCTCCATACACTCCTTGTGAAGGATATCACTTGGTCGAGTGA 810 44.57 MEWQNQQQQNQTEQLQMQVEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNVPDYSPYTPCEGYHLVE* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3182409 3183736 + Chy7G132300.1 Chy07g00400 230411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00400 269 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Chy07g00400 269 SUPERFAMILY Homeodomain-like 95 158 IPR009057 -
Chy07g00400 269 SMART HOX_1 94 161 IPR001356 GO:0003677
Chy07g00400 269 MobiDBLite consensus disorder prediction 171 185 - -
Chy07g00400 269 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 265 IPR044559 GO:0003700
Chy07g00400 269 Coils Coil 5 25 - -
Chy07g00400 269 CDD homeodomain 96 158 IPR001356 GO:0003677
Chy07g00400 269 MobiDBLite consensus disorder prediction 154 185 - -
Chy07g00400 269 Gene3D - 98 162 - -
Chy07g00400 269 PANTHER - 1 265 - -
Chy07g00400 269 Pfam Homeodomain 96 156 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00400 - - - csv:101204139 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01735 Chy-Chr4:23725336 Chy07g00400 Chy-Chr7:3182409 1.13E-14 dispersed
Chy06g02276 Chy-Chr6:26696933 Chy07g00400 Chy-Chr7:3182409 3.06E-98 dispersed
Chy07g00400 Chy-Chr7:3182409 Chy11g01253 Chy-Chr11:18672533 1.93E-12 dispersed
Chy07g00400 Chy-Chr7:3182409 Chy12g01399 Chy-Chr12:18125161 3.42E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18289 PF00046 Homeodomain 8.50E-18 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00400 Chy_Chr07 FPKM 9.349976 10.400435 8.523605 8.574774 16.229605 16.988611 16.720579 11.29529 10.981837 10.364061