Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00402 ATGAGTTCGAATAACCCCACCCGAAAAGTTCTGTGTAACACTGCCAAAATGGTCTATGCAAAAGGGGGGAGGAAGCCTAAATCCAAGCCCAACCCAACTTATCGGCTTAAGAAGAATGTGTACCGGATTGGTGGCATCCAAGTGGAATTTCCATTCCGACCATACGGTTCGCAGCTGGAGTTCATGGGCAGAGTTATATCCACCCTTGATCGAGCTCAGCGAGAGGGCCATTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCACTTTCACTTCTCTGCTCTAGTCTTGCTTGGCAGAAGAATTACAAGATAAAGAATCAGGATGCTAATTCCTGTCACACGAAGCCTGCTCCAGAGGCTGCCACGGATCCTCTCGGTTTTGGCGGTGGATTTATTCCCGAAGTGCAGCCGTCAAATACAGAGTCATCTCTTCCAGGGCCAAACAACAAAAGTCGGAAGAAAAAAACAGCTCCGACCATTTACTACTCCTCGAGGACACATTCACAGATATCACAGGTGATCCGTGAGTATAGGAAAACTACCTATCGAGTGCCAATGGCAGTGTTGGCGTCAAGGAAACATCTATGCACAAATCCTCGTGTACGAGGGAAAGATAATTTAGATGAAAAATGCAAACTACTTTTGAAGGATCAAGATGCAGGATGCAGTGAATTTAAAAACGCAAACAAGGTTAAATGTCATCCAACACTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTGGTGAAAATTGGAGAAGCTGTAAAAGGTTGTTCATATTATGCAGCTCGCTCTATGGCATACAACGCACAGCTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAAGAGCAATTGGTGTAGATGTTAAGGATGCGATTGTGATCTTTGATGAAGCCCACAATATAGAGGATATTGCACGTCATGGTGGTAGTGTGGATATTGAAGAGGATACTTTAAATAAATTGCAGATGGAGTTAGAGCAACTATGTTTTATTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCAAAAGTTGGATTGACCAAAGGAAGACCACATTGCAGGAGCGCGAGTTTCAGCATTATGTCACCTGTTGGACTGGCAATCATGCTCAAATGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCCATTTTACTCGAATGTGCAACAAAGGCTACTAAAGCAGCTTCATATACGGTGTCAAATGATGCACATTTGAGTGGTCTGTCAGTGTTAACACTGGAAGGATTATTCTCTTCATTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGACTACCAGCTTGCATTACAACGCTACACTAAAAGAGATCCTGAAAAAGCTTGTGCTAAATGGACGGTTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGTGATCTTTCCTTATCGGTTATTTTGACATCTGGGACCCTGTCACCGATGAATTCCTTTTCATCTGAACTAGGAGTTCGGTTTGGAACTTCACTGGAAGCTCCTCACGTGATTGATGTGGAATCTCAGGTGTTGCCAGCTATTATATCAACTGGTCCAGGAAACTATCCGCTGAATGCAAGTTATAAAACAGCTGATGGATATGCATTCCAGGATGCTCTAGGAAAATCATTAGAGGAGATATTTTTTATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCCAGTTATAAGCTGATGGAGAAACTCCGAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGTCAAGTGGAGGAGCTCAAGAAGATTTTGATTCCATATTGAAAGGTTATTATGATACTATACGTCTTGGTGATAACTTTGCAGTTGGGAAGAAGGTCAAACCTGATGACTCATATGTGGTTGGCTGTGAAAATCCCGAGGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAGATATAAATGATATTCAAGTTGCATTGAAGAAAAAGTTCAATGACAAATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTTCGAGCTCTAAATCAAGCTGCAGGACGTTGTATTCGACACAAATTTGACTATGGTGCCATTGTGCTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGACTTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGGAGGAGCTGAAATCCTTTTTCAGCCACATTATGGAGCGCATTAGCAACAAGACAGAAAGTGAGTTGCCAAAATCTATGAATGAGGAGCATATTACTTTTACCTGCCCAAGTAGTTGTAGAAGAACGAAGATAGAGGAATTTGACAAGTTTAATTATCGTGGGCAGAAAGCTTACCAAGATGTGAAAAACTGTACAGTTGATATTTCTCAAGAAAAGTTTGTTACTGATCCCAAAACCAAAAATCACGAATGTAACAGTGTGGACAGAAGCTCAGTAATCAGCGGAAATTTGACTAGCCCAAAAGATACTAGTGATGAAATTCGTCTCACAGAAAAGAAGTTTAACAGTTTAAATGTCACACAAGTGCCCAAGCTAAATGATACTGTTCCTGTTTTTCTGTCACCTGGCCTTCGAAAGGACAAAAAGTTGCATCTATCTTGTGCACTTTGTAGAAACCCACTCGGTCGCCCAGAGAACCATTTAAACATAACGTGCTCATTTACTGTATCATCAAAAACACACTTAATATCGATATATAAGGAAAGGTTTAAAGCTCAAACTGCCAATTCGTCTGCAAATATACAGCTTATTATTACAGACATCTTGTTTATTAACCAGAGGCTCCTAGTTAGGTCTTCGAAAAATTCAGGATGTGGTATATGGAGTGAGGAGGATGGTTGTGTATACAATTATGTCTTTTGCCCCTTCTGTTTCAGTGACAATTGTATTGGTGTACAGATCATGGCAACTAATGCATCAAATATACCGTTACTTTATAAGGTGATGTTTTTCGTGGAGTGTTTGGAGATCCAAGACCTCAGCTCCAAGCTGATACAGGAAAGGCTTGAGTAA 3198 40.84 MSSNNPTRKVLCNTAKMVYAKGGRKPKSKPNPTYRLKKNVYRIGGIQVEFPFRPYGSQLEFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQDANSCHTKPAPEAATDPLGFGGGFIPEVQPSNTESSLPGPNNKSRKKKTAPTIYYSSRTHSQISQVIREYRKTTYRVPMAVLASRKHLCTNPRVRGKDNLDEKCKLLLKDQDAGCSEFKNANKVKCHPTLQKGGCHEVHDIEDLVKIGEAVKGCSYYAARSMAYNAQLVFCPYSYIINPVIRRAIGVDVKDAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCFINSLVYQPLYEMTQDLKSWIDQRKTTLQEREFQHYVTCWTGNHAQMELQEANITQQCFPILLECATKATKAASYTVSNDAHLSGLSVLTLEGLFSSLTYFFSRNGCHMSDYQLALQRYTKRDPEKACAKWTVTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVRFGTSLEAPHVIDVESQVLPAIISTGPGNYPLNASYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLRNRWSETGQWSRLNARKSLFVESSGGAQEDFDSILKGYYDTIRLGDNFAVGKKVKPDDSYVVGCENPEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPDINDIQVALKKKFNDKYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMEELKSFFSHIMERISNKTESELPKSMNEEHITFTCPSSCRRTKIEEFDKFNYRGQKAYQDVKNCTVDISQEKFVTDPKTKNHECNSVDRSSVISGNLTSPKDTSDEIRLTEKKFNSLNVTQVPKLNDTVPVFLSPGLRKDKKLHLSCALCRNPLGRPENHLNITCSFTVSSKTHLISIYKERFKAQTANSSANIQLIITDILFINQRLLVRSSKNSGCGIWSEEDGCVYNYVFCPFCFSDNCIGVQIMATNASNIPLLYKVMFFVECLEIQDLSSKLIQERLE* 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3195279 3202797 - Chy7G132320.1 Chy07g00402 230413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00402 1065 MobiDBLite consensus disorder prediction 138 160 - -
Chy07g00402 1065 PANTHER FANCONI ANEMIA GROUP J PROTEIN 33 976 - -
Chy07g00402 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 751 IPR027417 -
Chy07g00402 1065 SMART deadxpd 46 344 IPR006554 GO:0003678|GO:0016818
Chy07g00402 1065 Gene3D - 53 367 IPR027417 -
Chy07g00402 1065 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 33 976 IPR045028 -
Chy07g00402 1065 Gene3D - 544 786 IPR027417 -
Chy07g00402 1065 MobiDBLite consensus disorder prediction 131 160 - -
Chy07g00402 1065 Pfam Helicase C-terminal domain 569 770 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Chy07g00402 1065 SMART Cxpdneu3 585 757 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Chy07g00402 1065 Pfam DEAD_2 165 329 IPR010614 GO:0003677|GO:0003678|GO:0005524
Chy07g00402 1065 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 44 357 IPR014013 GO:0005524
Chy07g00402 1065 CDD SF2_C_XPD 531 755 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00402 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101218075 1743.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02061 Chy-Chr1:25446226 Chy07g00402 Chy-Chr7:3195279 9.54E-105 dispersed
Chy07g00401 Chy-Chr7:3184764 Chy07g00402 Chy-Chr7:3195279 1.19E-110 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00402 Chy_Chr07 FPKM 36.788597 41.498787 32.342434 33.828274 19.654308 20.55563 19.32181 43.064754 43.317543 39.049191