Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00403 ATGGCATTCGGCGCTTCCCGGCGTCTTCTTTCCTATCAACTCAGAGCCTGCTCTTGGCGACTTATTGCCAGTGGCAGGTATCACTATCCCTTAATCCACTCACCGTCGCCGGCTTTATCATTCTTGTTTTCAACCCTAGATGAACCTTCAAATCTATTTGATGATGGTCTTTCGGGTAATGGGGATCGAAATCAACGCTGCATAGACGAGCGATTCGTTATCAGCGAACTTTCTGATCTTCTACTAGTTAATCCTTATGGTTCGGTTTCTAACACTCTCAAAGAGAATCCCACTGAGAAACAGATGCCAATTAGGGCAGTTGATGGATTCTTACTTCCAGAAGAGAAATTGCGAGGTGTTTTCCTTCAAAAACTGAATGGTAAAACCGCAATTGAGCATGCTTTAGCTAATACTGATGTGAATTTGAGCCAAGATGTTGTCAGCAAAGTATTAAACACCGGGAGTTTAGGTAGCGAAGCAATGGTTACCTTCTTTTCTTGGGCTATTAAACAGCCGTCGATACCTAAAGATGCTTCTAGTTACAACATAATTCTTAAAGCTTTAGGTAGAAGGGGATTTTTTGACTCCATGATGGATGTTTTGTACAACATGACACTGGAGGGAGTGGAGGCTACATTGGAAATGGTATCCATTGTAGTAGACAGTCTGGTCAAGGGTCACCAAGTTTCTAAGGCACTTCAATTTTTCAGAAACTTGAAAGAAATTGGGTTGAAATGTGATACTGAAACCTTGAACATTCTTCTACAATGCATGTGTCGACGATCCCACGTTGGTGCTGCAAACTCCTTCTTTAATTTAACCAAGGGGAATATCCCTTTCAATGTCATGACATATAACATTGTAATTGGTGGATGGTCAAGATACGGTAGGCACAGTGAAGTTGAGCAAACGTTGAAAGCAATGGAACTTGATGGATTTTCTCCAGACTGTCTGACCCACACTTATCTTATTGAGTGTCTTGGCAGAGCTAATCGGATTGATGATGCTGTCAAGATTTTTGATAAAATGGATGAAAACGGCTGTACACCAGATGTTGATGCCTACAATGCAATGATCTCCAACTTTATATGTATAGGTGATTTTGATCAATGCCTGACCTATTACAAGCGTATGTTGAGCAACAGATGTGAACCTGACATGAACACCTATTCGAATTTGATTACTGGCTTTCTCAAGGCCAAGAAAGTAGCCGATGCACTAGAAATGTTTGATGAAATGGTGGCAAGAATAATTCCTGCTACGGGGGCAATAACATCCTTTATTCAACTTAGCTGTAGTTATGGTCCTCCGCACGCAGCTATGTTAATCTACAAGAAAGCAAGAAAAGTTGGATGTAGGATATCCAAGAATGCATACAAATTGTTGCTAATGCGGCTTTCTTTGTTTGGTAAATTTGGCATGCTATTAAATATATGGAATGAGATGCAAGAAAGTGGTTATGATCCTGATGTGGAAACTTATGAGCATGCCATTGGCTGTCTTTGTAAAACAGGGCAGCTTGAAAATGCTGTACTCGTCATGGAGGAATGTTTACATCAGGGTTTCTTCCCAAGTAGGCGAACACGTAGTAAGCTTAATAACAAACTATTGGCCTGTAATAGGACAGAGATGGCATATAAACTCTGGTTGAAAATCAAAGTTGCTCGTCATCAGGAAAATCTGCAAAGATGTTGGCGTGCCAAGGGATGGCATTATTGA 1719 40.84 MAFGASRRLLSYQLRACSWRLIASGRYHYPLIHSPSPALSFLFSTLDEPSNLFDDGLSGNGDRNQRCIDERFVISELSDLLLVNPYGSVSNTLKENPTEKQMPIRAVDGFLLPEEKLRGVFLQKLNGKTAIEHALANTDVNLSQDVVSKVLNTGSLGSEAMVTFFSWAIKQPSIPKDASSYNIILKALGRRGFFDSMMDVLYNMTLEGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTETLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHSEVEQTLKAMELDGFSPDCLTHTYLIECLGRANRIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYKRMLSNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARIIPATGAITSFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIGCLCKTGQLENAVLVMEECLHQGFFPSRRTRSKLNNKLLACNRTEMAYKLWLKIKVARHQENLQRCWRAKGWHY* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3205255 3206973 + Chy7G132330.1 Chy07g00403 230414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00403 572 Gene3D Tetratricopeptide repeat domain 128 266 IPR011990 GO:0005515
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Chy07g00403 572 Pfam Pentatricopeptide repeat domain 305 361 IPR002885 -
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Chy07g00403 572 PANTHER OS02G0304800 PROTEIN 21 572 - -
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Chy07g00403 572 Pfam PPR repeat 493 521 IPR002885 -
Chy07g00403 572 Pfam PPR repeat 180 209 IPR002885 -
Chy07g00403 572 Pfam PPR repeat 382 414 IPR002885 -
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Chy07g00403 572 SUPERFAMILY TPR-like 159 461 IPR011990 GO:0005515
Chy07g00403 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Chy07g00403 572 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 21 572 - -
Chy07g00403 572 Gene3D Tetratricopeptide repeat domain 420 571 IPR011990 GO:0005515
Chy07g00403 572 Gene3D Tetratricopeptide repeat domain 267 419 IPR011990 GO:0005515
Chy07g00403 572 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Chy07g00403 572 TIGRFAM PPR: pentatricopeptide repeat domain 180 211 IPR002885 -
Chy07g00403 572 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Chy07g00403 572 TIGRFAM PPR: pentatricopeptide repeat domain 389 416 IPR002885 -
Chy07g00403 572 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00403 - - - csv:101204379 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00403 Chy-Chr7:3205255 Chy05g01036 Chy-Chr5:14969010 1.16E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00403 Chy_Chr07 FPKM 31.925121 35.543854 38.69519 37.488667 13.909238 15.193093 14.11653 20.396523 20.534195 21.04048