Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00404 ATGGATCAGTTCGACGTATTCTTTAGGAGAGCCGATTTGGATGGTGATGGGAGGATTAGTGGAGCTGAAGCTGTTTCTTTCTTTCAGGGCTCTAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGTCGACCGGAATTTTATAATGCTCTCAGACTTGTGACTGTTGCTCAAAGTAAGCGAGAGCTAACACCTGAAATTGTAAAGGCAGCATTATATGGTCCTGCTGCTGCGAAAATCCCCCCACCAAAGATTGATCTGCAGGCTCTATCTGCCCCTCAATCAACTTCAGTGTCTGCTGCATCTCCTCCACAGATGAGTATACCTGCACCAACGGGATCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAATGTGGGCGTGAACCAGCAGTATGTATCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCCACACCTGGTGGTGTTGCTTCCAATATGCAACTGGTTGTTTCTTCTGAACCTTCTGGAGGAGGAAATCTACTGGGCTCAAATCTTTCAAACCCAAATGATTGGCTCAATGGAAGGCCAGGTGGGGGCCCTGCTGCTGGGCCTAGAGGAGTCAGTCCTTCCCTGCCTTCCCCAGCTACGTCGTTATCTCCAGCTTTAATGACTTCGCAGCCTATGCCTAATGATAGAGCACCAGCTGTTACTGGTAATGGATTTGCTTCTAAGTCAGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCAGAATCTTCTGGATTCAACAATGCAGCTAATAGTAGTATTGGTCCATCAGCGATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTAAGTCCACATCATTGGAGTCATTGCAGAGTGCATTTGTTTCAAGACCATTAGCTAGTTCACAGTTTCAGCTTTCTCACTCACCACCGGAACCTAACAAGGAGGTTCGAGCAACAGGTCCATTGCCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAACTGTTGCTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGATGGCAGAATTACCGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGACGGCCACTTCCAGCTGCGCTTCCAAATAATGTTATGTTTGATGAAACTCTGTTGTCCATGACAGGACAATCTAACGTTGTCCATCCAAATGCAGCTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGCTGGATTGAGACCGCCAACAAATATACCTGCTTCGAAAGCTGAGGGTGCTAAACTATCCAATGAGCAGAAATCAAGGGCTCCGGTGTTGGAGGATTCATTTCTGGACCAGTCTGACAAGGCGCAAGATGCTGCAGCATCTGAGAAAAAGGTTGGAGAGATTGCGAATGTTATTTTGGATTCAAAAGAAAAGATTGAATATTATCGCACAATGATGCAGGAACTTGTTCTACATAAAAGCAGATGTGATAATAGATTAAATGAAATCACAGAAAGGGCATCTGCTGACAAGCGTGAGGCAGAATCTTTGGGAAAAAAATATGAGGAAAAATACAAGCAGGTGGCTGAAATAGCATCCAAGTTAACCATTGAAGAGGCAAAATTTCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCCGATGGTATTCTTCAGGTCCGAGCTGATAGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAGTCGGCAGCTATAATTGAGCTTCCAGTAGGTTGGCAACCTGGAATTCCGGATAATGCAGCTATTTGGGATGAAGAGTGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTTAACCTAGACCCGAAAAGTGTTTCTGCCTCAAAACCAAAAATGTCAGACAGTGAAAAGGACTCAGCAGATTATAACTCAACTCCTGATTCATCCTCAAATGCCAATGGCAAAGCAGGGCACTCCTTCAGTAACATTAATCGTGGCCTCGAGAATGAATCTTTGTATAGCCACAGTGAAGATGAGTCAGCAAGAAGTCCATATGGCAGCCCAGCTGCTAAGACATCTCTAGAAAGCCCTTCTCATGACTTTTCAGATGCTGGTTTTGAGAAAAGTCCAGAGGCATATGGAAGTTTCAATGACTCCGCCTGGGGCACCTTTGACAATAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCGGAAAAGCACAGAGATTTCTTTGGATCCAGTGATTTTGATACTAGCTCCGTCAGAACAGGATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCGCTCTCTAGATTCGGCAACTCTTCCCCTCGCTATAGCGATGTGGGGGATCACTACTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGTTTTTCTCCTCAGCGCGAGAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCTCGCGATTTTGGCAATAATCAAGAGAAGTTCTCTAGATTCGATTCAATAAGCAGTTCTCGTGATTTTGGCAATAATCAAGAGAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCTCGTGATTTTGGCCATAATCAAGACAAGTTTTCAAGGTTTGATTCTATGAGTAGTAGTAGCATGGACTTCGGCCAGAATAGCCAGAGGCATGCCAGGTTTGACTCCATTGGCAGCTCCAAAGATTTCGGCCATGGTGCCTTCTCTTTTGATGATGCAGCAGATCCATTTGGAACCTCTGGTCCCTTTAAAGTCTCATCGGAGAGCCACAGTCCGAAGAAAAGTTCTGACAATTGGAGAGCTTTTTAA 3150 44.16 MDQFDVFFRRADLDGDGRISGAEAVSFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLQALSAPQSTSVSAASPPQMSIPAPTGSQNFGFRGQGVPNVGVNQQYVSAQPNPSMRLPQATPGGVASNMQLVVSSEPSGGGNLLGSNLSNPNDWLNGRPGGGPAAGPRGVSPSLPSPATSLSPALMTSQPMPNDRAPAVTGNGFASKSAFGADMFSVTPSPPRPESSGFNNAANSSIGPSAIVPVSSVSQPLSKSTSLESLQSAFVSRPLASSQFQLSHSPPEPNKEVRATGPLPLISSGITTGARNSTSETVAWPKMKPTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQSNVVHPNAAWGPRPGFGQQQPQVTARSMAPTAGLRPPTNIPASKAEGAKLSNEQKSRAPVLEDSFLDQSDKAQDAAASEKKVGEIANVILDSKEKIEYYRTMMQELVLHKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTIEEAKFRDVQERKTELHQAIIKMEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDNAAIWDEEWDKFEDEGFSNDLNLDPKSVSASKPKMSDSEKDSADYNSTPDSSSNANGKAGHSFSNINRGLENESLYSHSEDESARSPYGSPAAKTSLESPSHDFSDAGFEKSPEAYGSFNDSAWGTFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFGSSDFDTSSVRTGSPNADSFFQRKSPFFEDSVPPTPLSRFGNSSPRYSDVGDHYFDNSSRFDSFSMQDGSFSPQREKFSRFDSISSSRDFGNNQEKFSRFDSISSSRDFGNNQEKFSRFDSISSSRDFGHNQDKFSRFDSMSSSSMDFGQNSQRHARFDSIGSSKDFGHGAFSFDDAADPFGTSGPFKVSSESHSPKKSSDNWRAF* 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3209181 3219575 + Chy7G132340.1 Chy07g00404 230415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00404 1049 Pfam EF hand 7 21 IPR002048 GO:0005509
Chy07g00404 1049 MobiDBLite consensus disorder prediction 172 242 - -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 768 789 - -
Chy07g00404 1049 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Chy07g00404 1049 SUPERFAMILY EF-hand 3 79 IPR011992 -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 211 233 - -
Chy07g00404 1049 Gene3D - 1 96 - -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 732 760 - -
Chy07g00404 1049 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 973 1049 - -
Chy07g00404 1049 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 936 - -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 463 532 - -
Chy07g00404 1049 SMART efh_1 3 31 IPR002048 GO:0005509
Chy07g00404 1049 SMART efh_1 37 65 IPR002048 GO:0005509
Chy07g00404 1049 SMART efh_1 363 391 IPR002048 GO:0005509
Chy07g00404 1049 SMART efh_1 397 425 IPR002048 GO:0005509
Chy07g00404 1049 MobiDBLite consensus disorder prediction 172 192 - -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 702 799 - -
Chy07g00404 1049 Pfam Cytoskeletal-regulatory complex EF hand 354 425 IPR000261 GO:0005515
Chy07g00404 1049 MobiDBLite consensus disorder prediction 979 1004 - -
Chy07g00404 1049 CDD EH 364 430 IPR000261 GO:0005515
Chy07g00404 1049 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Chy07g00404 1049 SMART eh_3 2 88 IPR000261 GO:0005515
Chy07g00404 1049 SMART eh_3 353 448 IPR000261 GO:0005515
Chy07g00404 1049 MobiDBLite consensus disorder prediction 822 859 - -
Chy07g00404 1049 MobiDBLite consensus disorder prediction 979 1001 - -
Chy07g00404 1049 CDD EH 4 70 IPR000261 GO:0005515
Chy07g00404 1049 MobiDBLite consensus disorder prediction 831 845 - -
Chy07g00404 1049 PANTHER EH DOMAIN 973 1049 - -
Chy07g00404 1049 PANTHER EH DOMAIN 1 936 - -
Chy07g00404 1049 SUPERFAMILY EF-hand 351 443 IPR011992 -
Chy07g00404 1049 Gene3D - 354 443 - -
Chy07g00404 1049 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Chy07g00404 1049 MobiDBLite consensus disorder prediction 1028 1049 - -
Chy07g00404 1049 ProSiteProfiles EH domain profile. 360 443 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00404 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1913.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00404 Chy-Chr7:3209181 Chy12g00547 Chy-Chr12:7657672 6.05E-13 dispersed
Chy01g00592 Chy-Chr1:4228094 Chy07g00404 Chy-Chr7:3209181 1.57E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00404 Chy_Chr07 FPKM 12.948454 14.733709 20.973345 18.256098 6.725856 5.474172 6.725818 6.514224 8.707737 8.799787