Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00408 ATGAGTTTCCTTTGGTCTGTTTCATTGTTATCTCTCGTTTGCGGTACTTTTCCTCTTGGATTTGGTAAGAACATGTCGTCAAGACCATCGGTTGTGAATATTGGAGCTATTTTATCTCATAATTCGACTATTGGAAGAGTTGCCACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCCGGAACCAACCTCTGGTTACAAACGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTTGAAGTCTTGCAACTTATGGAGAATAAAACAGTTGCCATCATAGGCCCCCAGTCTTCTGTTGTTGCCCACATTTCATCCCAAGTTGCAACTGAATTCCAAGTTCCTCTAGTCTCCTTTTCAGCTACTGATCCTACCCTCTCTGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCGGTTGCTGAGATTGTTGAACACTATAAATGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAACGGAATTGCAACATTGGGCGATAAACTTGCCGAAAGGCGTTGTAAAATCACATATAAGGTGGCTATTAGTCCAGATTCTGTGGATAATCGAGCCCAAGTTATGGATCAGCTTGTTAAAGTTGCTCTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACCTTGGTTTTTTCAGTTGCTAAGTACCTTCAAATGGTGGGCAATGGATATGTATGGATTGCGACTGATTGGCTTACGTCTCTATTAGACAGTGTTGTTCCTTTCCCTTTTGAAAACATGGAGTCGATGCAAGGAGTTCTTTCTCTACGGCAGCACACAGCAGAATCTGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATACTTATGGTCTGTATGCTTATGACTCTGTTTGGATGGTTGCTCATGCCATAGACAAATTTTTCAGTCAAGGTGGGGTCGTCACACACTCTAACGACTCCAAGTTGCATTTCAATGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTACTGAATAACATATTGGAGAGTGATTTTGTTGGTCTGACTGGTGCCATTAAGTTCGATTTGGACAGATCTCTTATTCATCCTGCATATGACATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGCTCCTGAGATACTCTATTCCAAACCACCCAATCGTTCACGCGCAAATCAGAAGTTGTATGAGGTGATATGGCCAGGAAATACAATAGAACAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTGTTGAAAATTGGTGTGCCACTTCGGGTCAGTTACAAGGAGTTTGTGTCAAAAATCAAGGGGACCGAAAGTTTCCAAGGTTTCTGCATTGATGTGTTTACGGCTGCCGTAAACTTATTGCCGTATGCTGTCCCGCACGAATTTATAGCCTTTGGCGACGGCCATCACAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGGGACATAGCCATTGTCACAAGACGTACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACGGAATACTGGGGCTTGGGCTTTTCTGCATCCATTTTCTCCCGCCATGTGGATGGTCACAGCTAGTTTCTTCTTTTTTATCGGAATAGTCGTTTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTGTTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTCTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTTTCCAATCACAGGAATTGAAACCTTGAGGGAAGGTGGCGAACCGATAGGTTTCCAAGTTGGATCGTTTGCTGAACGCTATCTGAGAGAGGAGCTGAACATATCTAAATCTAGGCTTATTGCTCTTGGATCACCCGAAGAATATGCCAGGGCACTTGTCCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTCCTATACGTAGAAAGTTTCCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCGACGGCCATTTTGCAGCTCTCAGAGAATGGTGATCTTCAACGGATTCATGACAAATGGCTAGCGAAAAGTGCTTGCACCATGGAAAATGCAGAGCTAGAATCAGATCGACTTCAACTTAAGAGCTTCTGGGGTCTTTTTCTAATATGTGGGATAGTTTGCTTCATTGCCCTTGCCATATATTGCTTTCAGATAATTCGTCAGTTATACCATACTGAAACGGAAGAACCCGATCTATCTAGCAGTAGTGGATCACATTCTAACCGCCTTCGACGAATTATATCACTATTGGATGAGAAGAAAGAATCTTCTAAAAGGGGAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGTCGATGATCATTTGGGGGTCGATCCTTGA 2757 42.87 MSFLWSVSLLSLVCGTFPLGFGKNMSSRPSVVNIGAILSHNSTIGRVATIAIEEAVKDVNADPSILPGTNLWLQTQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEHYKWKEVIAIYVDDDYGWNGIATLGDKLAERRCKITYKVAISPDSVDNRAQVMDQLVKVALMESRVMVLHVNPKLGTLVFSVAKYLQMVGNGYVWIATDWLTSLLDSVVPFPFENMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNTYGLYAYDSVWMVAHAIDKFFSQGGVVTHSNDSKLHFNESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLIHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPEILYSKPPNRSRANQKLYEVIWPGNTIEQPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTESFQGFCIDVFTAAVNLLPYAVPHEFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTRRTRLVDFTLPYTASGLVVVAPFKKRNTGAWAFLHPFSPAMWMVTASFFFFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYFPITGIETLREGGEPIGFQVGSFAERYLREELNISKSRLIALGSPEEYARALVLGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLAKSACTMENAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYHTETEEPDLSSSSGSHSNRLRRIISLLDEKKESSKRGSKRRKVEKSSENDKVDDHLGVDP* 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3234623 3238443 + Chy7G132380.1 Chy07g00408 230419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00408 918 Pfam Ligand-gated ion channel 811 841 IPR001320 GO:0015276|GO:0016020
Chy07g00408 918 SMART GluR_14 469 811 IPR001320 GO:0015276|GO:0016020
Chy07g00408 918 Pfam Receptor family ligand binding region 51 406 IPR001828 -
Chy07g00408 918 Gene3D - 773 808 - -
Chy07g00408 918 Gene3D - 459 577 - -
Chy07g00408 918 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Chy07g00408 918 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Chy07g00408 918 Gene3D - 578 704 - -
Chy07g00408 918 MobiDBLite consensus disorder prediction 884 918 - -
Chy07g00408 918 PIRSF IGluLR_plant 1 915 IPR017103 -
Chy07g00408 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 917 - -
Chy07g00408 918 Gene3D - 740 772 - -
Chy07g00408 918 CDD GluR_Plant 466 809 - -
Chy07g00408 918 Pfam Bacterial extracellular solute-binding proteins, family 3 488 810 IPR001638 -
Chy07g00408 918 PANTHER GLUTAMATE RECEPTOR 3.3 12 917 - -
Chy07g00408 918 Gene3D - 50 396 - -
Chy07g00408 918 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Chy07g00408 918 Gene3D - 147 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00408 Chy-Chr7:3234623 Chy11g00602 Chy-Chr11:6997659 0 dispersed
Chy01g00586 Chy-Chr1:4180344 Chy07g00408 Chy-Chr7:3234623 0 wgd
Chy02g00503 Chy-Chr2:3072710 Chy07g00408 Chy-Chr7:3234623 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00408 K05387 - csv:101204862 1771.9