Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00412 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGCGCTTTGATTTGCGTCCTTGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTTCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGTGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG 558 55.02 MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTSEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3251541 3252098 + Chy7G132420.1 Chy07g00412 230423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00412 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
Chy07g00412 185 PANTHER RING-H2 FINGER PROTEIN ATL8 2 178 - -
Chy07g00412 185 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Chy07g00412 185 SUPERFAMILY RING/U-box 83 150 - -
Chy07g00412 185 MobiDBLite consensus disorder prediction 170 185 - -
Chy07g00412 185 Pfam Ring finger domain 101 144 IPR001841 -
Chy07g00412 185 MobiDBLite consensus disorder prediction 159 185 - -
Chy07g00412 185 CDD RING-H2_PA-TM-RING 101 144 - -
Chy07g00412 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 178 - -
Chy07g00412 185 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02293 Chy-Chr6:26825190 Chy07g00412 Chy-Chr7:3251541 3.53E-57 dispersed
Chy07g00412 Chy-Chr7:3251541 Chy11g00059 Chy-Chr11:629562 3.68E-31 dispersed
Chy07g00412 Chy-Chr7:3251541 Chy03g00227 Chy-Chr3:2130011 1.26E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00412 - - csv:101207021 370.933