Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00438 ATGGACGACCCCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACCAGTCGCTACACTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCTCTAAATTCCTCACCAAACCCTCCAACCTAAACAACACCACTCTCGATGACCACGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGACCCCGTCTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCACCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGGCTTGCGGGGCATAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGGACCCCCAAGCACTGGAAATCTTGACATCGTCAGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCTGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTTCAGCACCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCAGATGCTCTTGCAATGCTGTCACAGAAGAGCAGTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTAGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGGCAGGTTCAAGGAACCCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCGCCAGAACATGATGCCCCACCGAACTTGACCGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCACTGAAGAAACTACCAGTAATGGGAAAATGCCAATCAGAAAAGAAGTTAATGGTGTTGAGGTTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTTGGATGGAGCAAGACCAAATTCGTTTCAAACTATTCCTTACCAAGCTGGATACACTTCTTCCGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAGCTTTTTGAAAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAGATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGGTTTATATGTCCATGTCATCCATTGCATGGGAACGGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCATAGTGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTACACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAACCTCGGTGTCACCTTTGGCAGTTGTGAGCGGACAAAAGACCTCATTTTTATTAAGGGGAAGGAATTTGAAAATTCCTGGCACCAGGATTCATTGCACATCTATGGGAGGCTACATATCCGAAGAAGTAATGGGATTAAGTAGTCTGGGATTAAGTAGTGAGGGAATATACGACGAGATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTATTATCATAGCTGATGCTACCATCTGTAGGGAATTAAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATACCAGTTTAGAAAGTCATTCATCTGTTTCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTTCTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTTCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCATGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACGCTTCTTGACATTTTGGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAAATTCAGCTCTTAAACCGGTCAGTGAAACGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCACGTATCTGGCTTTGGTGATGCAGAGAAGAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCATCAATGGCAGATGCAGAAAATTTGGTTGATGCTCTAACAAACGACCCGCTAGAGATTGGATTGGAATGCTGGAGTTCCCAACTTGATGAAAGCGGACGGTCGCCACAGGCTTATGCTTTAATGAGGGGTAATCATACTTGTAATGAGCTGGTGAAGCGAAAACTTGCTGACAGAAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGGCGGGTGAAAGGTAGGTCCTGCTCCAGATGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGTGTGTGCTTATTTTTACGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTAGGCTATGGGACAATTTAG 3096 45.28 MDDPGAQVVPPIFIHQSLTSRYTDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTLDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGKMPIRKEVNGVEVRKPPSSNIPFELFRELDGARPNSFQTIPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPIIIADATICRELRHLESDFDEFKVPDTSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLMFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISEIQLLNRSVKRRCRQMVDLLVHYHVSGFGDAEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRSPQAYALMRGNHTCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3355994 3360743 + Chy7G132680.1 Chy07g00438 230449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00438 1031 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Chy07g00438 1031 MobiDBLite consensus disorder prediction 469 494 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 264 289 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 314 417 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 267 289 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 314 338 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 190 206 - -
Chy07g00438 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 38 1031 - -
Chy07g00438 1031 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Chy07g00438 1031 Pfam SBP domain 110 183 IPR004333 GO:0003677
Chy07g00438 1031 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Chy07g00438 1031 MobiDBLite consensus disorder prediction 391 417 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 346 363 - -
Chy07g00438 1031 MobiDBLite consensus disorder prediction 176 206 - -
Chy07g00438 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 1031 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01191 Chy-Chr4:18281127 Chy07g00438 Chy-Chr7:3355994 8.27E-37 dispersed
Chy06g00041 Chy-Chr6:308858 Chy07g00438 Chy-Chr7:3355994 1.09E-33 dispersed
Chy06g00647 Chy-Chr6:4387129 Chy07g00438 Chy-Chr7:3355994 2.15E-20 dispersed
Chy07g00064 Chy-Chr7:584695 Chy07g00438 Chy-Chr7:3355994 3.70E-36 dispersed
Chy07g00438 Chy-Chr7:3355994 Chy04g01766 Chy-Chr4:24011958 2.48E-32 dispersed
Chy07g00438 Chy-Chr7:3355994 Chy11g01795 Chy-Chr11:24330473 2.39E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18292 PF03110 SBP 3.50E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00438 - - csv:101219733 1955.64